Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq8 105 7e-18 seq7 86.0 6e-12 >seq8 Length=28014461 Score = 105 bits (116), Expect = 7e-18 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 139536 GGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-G 139594 |||| || || | ||| | || | ||| | || ||||| || || ||||| ||||| | Sbjct 24291000 GGCCACCACGGAGACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTG 24290941 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || | | || || |||||||| || ||||| ||||||| || |||||||| || Sbjct 24290940 CTAAG-GCGCGGCCATCCTCGAGCTGCTTGCCAGCCAAGATCAGTCGCTGCTGATCCGGG 24290882 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || ||||| || ||||| ||| | |||| ||||| | || | |||||| | | ||| Sbjct 24290881 GGAATGCCCTCCTTGTCC-TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTC 24290823 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | || ||||||||||| || || || || |||||||| Sbjct 24290822 AACCTCCAGGGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 24290772 >seq7 Length=28646061 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | |||| || | ||| | || || || ||||| ||||| || || Sbjct 24916118 CCGCCCCGGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCA 24916059 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || |||||| |||| ||||| ||||| || || || Sbjct 24916058 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 24915999 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||||| || ||| ||| Sbjct 24915998 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCGATCGTGTCGGAGGACTCGACC 24915939 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| || | || || |||||||||||||| Sbjct 24915938 TCCAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACGAATATTTGCAT 24915892 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||||||||| | || | | || || ||||| || ||| Sbjct 24915860 GTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCA 24915801 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| || |||||||| || ||||| ||||| || ||||| ||| | || | || Sbjct 24915800 GCGAAGATAAGGCGTTGCTGGTCCGGAGGGATGCCCTCCTTGTC-CTGAATCTTAGCCTT 24915742 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || |||| || ||| ||||| | ||| | |||||||| || | || Sbjct 24915741 CACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 24915682 Query 139747 TTTTACGAATATTTGCAT 139764 || |||||||| ||||| Sbjct 24915681 CTTAACGAATATCTGCAT 24915664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063925590400