Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq8 84.2 2e-11 >seq8 Length=28014461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 || || || || || ||||||||||| ||| | | || || ||||| || || || Sbjct 24290968 GTGGACTCCTTCTGGATGTTGTAATCTGCTAAG-GCGCGGCCATCCTCGAGCTGCTTGCC 24290910 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 ||| ||||||| || |||||||| || || ||||| || ||||| ||| ||| ||| Sbjct 24290909 AGCCAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGAATCTTTGCTTT 24290850 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 || | || | ||||| | | || || || | || | || |||||||||||||| Sbjct 24290849 TACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAATGGTTTTGCCGGTCAATGT 24290790 Query 143167 TTTTACGAATATTTGCAT 143184 || || || |||||||| Sbjct 24290789 CTTGACAAAGATTTGCAT 24290772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014323947840