Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 >seq6 Length=36134596 Score = 113 bits (124), Expect = 4e-20 Identities = 167/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| || || | || || | || |||| ||| | ||||||| Sbjct 25887769 ACGCCGGTGGATCCGAACCCTCCCTCTCCCCTGACGGTGGCGTCGAGGTCCTCCACCTCG 25887828 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || | | | | | |||| ||||| |||||| || |||||||| | ||| Sbjct 25887829 GCGACCTCCGGCGTCACGATCAC-CTCGATGATCATCTGCGCGATCCGGTCGCCGGGCTT 25887887 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 || |||| ||| ||| | | |||||| || | | || || ||| |||||||| Sbjct 25887888 CACGGCGAAGTCGGTGTCGGAGTGGTTGAAGAGGATGATCCCTACCGGGCCACGGTAGTC 25887947 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||| ||||| || |||||||||||||| ||||||| | |||||| || || Sbjct 25887948 GGCGTCGATCACCCCGGCGCCCACGTCGATCGAGTGCTTCAACGCCAGCCCAGA 25888001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054337104544