Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq8 102 7e-17 seq11 93.3 4e-14 seq7 91.5 1e-13 seq5 89.7 4e-13 seq9 82.4 6e-11 seq1 82.4 6e-11 >seq8 Length=28014461 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 48511 CCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC 48570 ||| | ||||| ||||| || |||||| || || ||||| |||||| || | Sbjct 24290759 CCTGAGCACTAGGTGAAGGGTAGACTCCTTGTGGATATTGTAGTCAGCCGGGGCGCGTCC 24290700 Query 48571 GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTT 48630 |||||| |||||||| ||| || | || || |||||||| ||| || | | ||||| Sbjct 24290699 GTCCTCGAGCTGCTTGCCGGCGAAGATGAAGCGCTGCTGGTCCCGGGGGATGCCCTCCTT 24290640 Query 48631 GTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 |||| ||| ||| ||| | | | || ||||| | |||||| ||| | || || Sbjct 24290639 GTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCGACCTCAAGCGTAAT 24290580 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| || ||||| || || || |||||||||||||| Sbjct 24290579 GGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 24290544 >seq11 Length=26703665 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/222 (70%), Gaps = 9/222 (4%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| ||||||||||| |||| ||| || || | ||||| |||||||| || || Sbjct 4117621 CTCCTTCTGAATGTTGTAGTCAG-CAAGGGTGCGTCCTTCCTCGAGCTGCTTGCCAGCGA 4117679 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||| ||| || | || ||||| ||| || ||| ||| | | Sbjct 4117680 AGATGAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGGATCTTCGCCTTCACAT 4117739 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || || |||| |||||| ||| | || |||| || ||||| || ||||||| Sbjct 4117740 TGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGATGGACTTGCCGGTCAGGGTTTTCA 4117799 Query 48714 CAAAAATCTGCATCGTGTCTTGATCGAAGA-AAGAGTGATGT 48754 |||| ||||||||| |||| |||| || |||||||| Sbjct 4117800 CAAAGATCTGCATC------TGATGAAAGATAACAGTGATGT 4117835 >seq7 Length=28646061 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| |||||||| || | |||||||||||| Sbjct 26601166 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCCAGCTGC 26601107 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| ||| || | || ||||||||| || || Sbjct 26601106 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTG 26601047 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | || || || | ||||| ||| | || ||||| || ||||| Sbjct 26601046 GCCTTCACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGGTC 26600987 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 26600986 AGGGTCTTGACGAAGATCTGCAT 26600964 >seq5 Length=35065507 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | ||| | ||||| ||| ||| || |||||||||||||||||| Sbjct 30648634 CCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCC 30648693 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || |||||| |||||||| ||| | | || | ||||||||| || || Sbjct 30648694 AGGGTCCGACTGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCAGGAGGG 30648753 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || ||| ||| | | | || || || | ||||| | Sbjct 30648754 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGACGACTCGACC 30648813 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || ||||| || || || | || |||||||| |||||||| Sbjct 30648814 TCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 30648860 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| |||| || | ||||| |||||||| ||| || | Sbjct 30648441 CTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAA 30648500 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || || |||||||| ||| || | | ||||||||| || ||| ||| | | Sbjct 30648501 GATCAAGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 30648560 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || |||| | |||||| ||| | || ||||| || ||||| || || || Sbjct 30648561 GTCG--ATCGTATGAGAAGACTCAACCTCAAGCGTAATGGTCTTGCCGGTCAGGGTCTTG 30648618 Query 48713 ACAAAAATCTGCAT 48726 |||||||||||||| Sbjct 30648619 ACAAAAATCTGCAT 30648632 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 ||||| || |||||| || |||||||| ||||| || ||| || | |||||||||| Sbjct 3013083 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTC-CTGCCATCCTCCAGCT 3013140 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || | || | ||||||||| ||| || | | ||||| || || | Sbjct 3013141 GCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCT 3013200 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | ||||| || | |||||| ||||| || || || || |||| Sbjct 3013201 TAGCCTTGACATTATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGG 3013260 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | | || |||||||| ||||||||| Sbjct 3013261 TCAATGTCTTCACAAAGATCTGCATC 3013286 >seq9 Length=29411429 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | ||| |||||||||||||||| ||| || | Sbjct 7709364 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 7709305 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| || ||| | | ||||||||| || ||| ||| | | Sbjct 7709304 GATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTT 7709245 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||||| ||| | || || || || || || || || ||| Sbjct 7709244 GTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTC 7709187 Query 48713 ACAAAAATCTGCATCGTG 48730 || || ||||||||| || Sbjct 7709186 ACGAAGATCTGCATCTTG 7709169 >seq1 Length=42845077 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| ||| |||||||||||||||| ||| || | Sbjct 24053799 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 24053740 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| ||| | | ||||||||| | ||| ||||| Sbjct 24053739 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACGTT 24053680 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || ||| | |||| ||| | || ||||| || || || || || ||||| Sbjct 24053679 CTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCAC 24053620 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 24053619 GAAGATCTGCATC 24053607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251138392012