Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq11 116 2e-21 seq12 113 2e-20 seq5 113 2e-20 seq1 113 2e-20 seq10 107 1e-18 seq2 107 1e-18 seq7 104 1e-17 seq6 102 4e-17 >seq11 Length=26703665 Score = 116 bits (128), Expect = 2e-21 Identities = 84/95 (88%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| || |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 22182354 AATAAAAAAT-AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 22182296 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC-GTCGA 11534 |||||||| |||| |||||||||| |||| ||||| Sbjct 22182295 GACGCTCTAACCAGCTGAGCTAATAGGCCAGTCGA 22182261 Score = 105 bits (116), Expect = 3e-18 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 18481472 TAAAAAATTTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 18481531 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 18481532 CGCTCTAACCAGCTGAGCTAATAGGCC 18481558 >seq12 Length=20407407 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 15713321 AAAAAATAGAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 15713262 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 15713261 GCTCTAACCAGCTGAGCTAATAGGCC 15713236 Score = 111 bits (122), Expect = 8e-20 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || |||||||| | ||| ||||||||| | | |||||||| ||||||||||||||||| Sbjct 11644509 AACTAATAAAACAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 11644568 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||| |||||||||| |||| Sbjct 11644569 GCACGACGCTCTAACCAGCTGAGCTAATAGGCC 11644601 >seq5 Length=35065507 Score = 113 bits (124), Expect = 2e-20 Identities = 79/91 (87%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| ||||||||||||| | | |||||||| ||||||||||||||||||| Sbjct 23303402 TTAAAAAAAAGATAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 23303343 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 23303342 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 23303312 Score = 105 bits (116), Expect = 3e-18 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATC--AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 22275595 AATAGAAAATTTAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 22275536 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 22275535 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 22275505 >seq1 Length=42845077 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 42635807 AACAAAAAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 42635866 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 42635867 GACGCTCTAACCAGCTGAGCTAATAGGCC 42635895 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| || ||||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 24286867 AAATAAGAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 24286926 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||| |||| |||||||||| |||| || Sbjct 24286927 GCTCTAACCAGCTGAGCTAATAGGCCATC 24286955 Score = 104 bits (114), Expect = 1e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 34269701 AAAAATAAAAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 34269642 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 34269641 GCTCTAACCAGCTGAGCTAATAGGCC 34269616 Score = 104 bits (114), Expect = 1e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 34277961 AAAAATAAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 34277902 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 34277901 GCTCTAACCAGCTGAGCTAATAGGCC 34277876 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 38228356 AATAAAAACAAAAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 38228297 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 38228296 GACGCTCTAACCAGCTGAGCTAATAGGCC 38228268 >seq10 Length=24717764 Score = 107 bits (118), Expect = 1e-18 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| ||||||||| | | || ||||| ||||||||||||||||||||||||| Sbjct 21440017 AAAAATAAAAGTGGCCCATGCAGGTCTCCAACCTGCGACCTTCGCGTTATTAGCACGACG 21439958 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||| |||| |||||||||| |||| || Sbjct 21439957 CTCTAACCAGCTGAGCTAATAGGCCTTC 21439930 >seq2 Length=21549876 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 15172923 AAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 15172866 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| |||| |||||||||| |||||| Sbjct 15172865 CTCTAACCAGCTGAGCTAATAGGCCGT 15172839 >seq7 Length=28646061 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| | | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 16128420 AAGAAAAAAAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 16128361 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 16128360 GACGCTCTAACCAGCTGAGCTAATAGGCC 16128332 Score = 104 bits (114), Expect = 1e-17 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 || |||| || | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 18322558 AATAAATAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 18322617 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| |||| |||||||||| ||||| Sbjct 18322618 CGCTCTAACCAGCTGAGCTAATAGGCCG 18322645 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 18486760 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 18486701 Query 11513 AACTGAGCTAATGGGCC 11529 | |||||||||| |||| Sbjct 18486700 AGCTGAGCTAATAGGCC 18486684 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11447 AAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||| ||||| ||||||||||| | |||||||| ||||||||||||||| || |||||| Sbjct 2492284 AAAACAAATAATGGCCCATGAAGGTCTCGAACCTGCGACCTTCGCGTTATCAGTACGACG 2492225 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 2492224 CTCTAACCAGCTGAGCTAATAGGCC 2492200 Score = 93.3 bits (102), Expect = 2e-14 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| | | | |||||| ||||||||||| |||||||||||| Sbjct 17862576 AAAAAATTA---TGGCCCATGCAGGTCTGGAACCTGCGACCTTCGCGATATTAGCACGAC 17862632 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 17862633 GCTCTAACCAGCTGAGCTAATAGGCC 17862658 >seq6 Length=36134596 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 14824387 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 14824446 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 14824447 CAGCTGAGCTAATAGGCC 14824464 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261491161756912