Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8 132 8e-27 seq7 127 3e-25 seq12 123 4e-24 seq2 123 4e-24 seq1 118 2e-22 seq4 116 6e-22 seq10 114 2e-21 >seq8 Length=28014461 Score = 132 bits (146), Expect = 8e-27 Identities = 193/270 (71%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||| ||| ||||| | ||| |||| | |||||||||| ||| ||||||| | || Sbjct 20615024 GCTAGGCGCCATCGGATTGTCT-TTCGCGGCTACATCCAAGGCATCGCCAAGCCGGTGAT 20614966 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || | ||||| || ||||| |||| || ||| |||| |||||| Sbjct 20614965 CCGACGCCTTGCAAGGAAGGGTGGCGTGAAGCGCATCTCAGGGTTGATCTACAAAGAGAC 20614906 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||||||||||||||| || |||| ||||| | ||| ||||| Sbjct 20614905 TCGTGGCGTGCTCGAGATCTTCCTCAAGAATGTCATCCGCGATGCCATTACCTACACCGA 20614846 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| ||| | || |||||||||| |||||||| |||| ||||| | || | ||| || Sbjct 20614845 GCATGCTCACCGCAAGACTGTCATGGCCATGGATGTCGTATATGCGCTCAAGCTTCAGGG 20614786 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 ||| | || |||| || || ||| ||| Sbjct 20614785 CCGCACCATCTATGACTTCGGCGGTTGATC 20614756 Score = 123 bits (136), Expect = 4e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || || |||||||| || ||||||||||| || || Sbjct 20608219 CGCCAAGCGTCACCGGAAGGTGCTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGAT 20608160 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 20608159 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 20608100 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 20608099 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 20608040 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 20608039 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 20607980 Query 16672 CCG 16674 ||| Sbjct 20607979 CCG 20607977 >seq7 Length=28646061 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 22635399 CGCGAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGAT 22635340 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || |||||||| |||| || | |||| || |||| Sbjct 22635339 CCGGAGGCTGGCGAGGAGGGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 22635280 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 22635279 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 22635220 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 22635219 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 22635160 Query 16672 CCG 16674 ||| Sbjct 22635159 CCG 22635157 >seq12 Length=20407407 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| | | || Sbjct 13284960 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGGCTGGCGAGGAGGGGC 13285019 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 13285020 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 13285079 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 13285080 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 13285139 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 13285140 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 13285180 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 12899925 CTTCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 12899984 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 12899985 GGGGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGATCTTC 12900044 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 12900045 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 12900104 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 12900105 ACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGGCCG 12900145 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 19865096 CTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 19865037 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 19865036 GGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 19864977 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || |||||||| || ||||| ||| Sbjct 19864976 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACGGAGCACGCCCGCCGCAAGACCGTC 19864917 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 19864916 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 19864876 >seq2 Length=21549876 Score = 123 bits (136), Expect = 4e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 19377831 CTGCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 19377772 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 19377771 GGCGTGAAGCGTATCTCCGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 19377712 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 19377711 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 19377652 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 19377651 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 19377611 >seq1 Length=42845077 Score = 118 bits (130), Expect = 2e-22 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||||| || || || |||||||| || ||||||||||| || || Sbjct 35066476 CGCGAAGAGGCATCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 35066535 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || || |||| || |||| Sbjct 35066536 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGAC 35066595 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || || || || Sbjct 35066596 CCGCGGCGTGCTTAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACTTACACGGA 35066655 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 35066656 GCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 35066715 Query 16672 CCG 16674 ||| Sbjct 35066716 CCG 35066718 >seq4 Length=20076173 Score = 116 bits (128), Expect = 6e-22 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || ||||||||||| || ||| Sbjct 16969899 GCGAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGATC 16969840 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 16969839 CGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACC 16969780 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 16969779 CGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACCCCGAG 16969720 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| ||||||| || | || || || ||| Sbjct 16969719 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGC 16969660 Query 16673 CG 16674 || Sbjct 16969659 CG 16969658 Score = 82.4 bits (90), Expect = 1e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || || |||||||| || ||||||||||| || || Sbjct 5931932 CGCCAAGCGTCACCGGAAGGTGCTCCGCGACAACATCCAGGGGATCACCAAGCCGGCGAT 5931991 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || || |||| || |||| Sbjct 5931992 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTGATCTACGAGGAGAC 5932051 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | || | |||||||||||| ||| ||| |||| Sbjct 5932052 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCC 5932089 >seq10 Length=24717764 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| | ||||| | | || Sbjct 16306888 CTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGAGGCTGGCGAGGAGGGGC 16306947 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 16306948 GGGGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGGGTGCTCAAGATCTTC 16307007 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 16307008 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 16307067 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| || | || || || ||||| Sbjct 16307068 ACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 16307108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075189028316