Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq2 632 3e-176 seq8 589 3e-163 seq4 288 1e-72 seq6 100 4e-16 seq9 96.9 4e-15 >seq2 Length=21549876 Score = 632 bits (700), Expect = 3e-176 Identities = 717/956 (75%), Gaps = 4/956 (0%) Strand=Plus/Plus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 |||||| | ||| | || |||||||| ||||| || || | || ||||| || || Sbjct 19773070 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19773129 Query 135434 ATGATTCCTACTCTTCTCG-CAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCAC 135491 ||||| ||||| ||| | | | || || |||| |||||| | || ||||||||||| | Sbjct 19773130 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCC 19773187 Query 135492 CTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATA 135551 |||| || |||||||| || || || || |||||| |||||||| || | |||||||| | Sbjct 19773188 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACA 19773247 Query 135552 ACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCA 135611 | || ||||||||||| |||| ||| || || ||||| | ||||| || || | Sbjct 19773248 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 19773307 Query 135612 TCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGG 135671 | ||||||||||| ||| ||||||||||| |||| ||||||||||||||| | ||| | | Sbjct 19773308 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTG 19773367 Query 135672 TCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACC 135731 | | |||||| | | ||||| | ||| |||||||| ||||||||||| || || Sbjct 19773368 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 19773427 Query 135732 GACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTG 135791 | ||||||||||| ||||||||| ||| || || ||||| |||||||| |||||||||| Sbjct 19773428 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 19773487 Query 135792 CTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCA 135851 |||||||| || | ||||| |||| ||||| |||| |||||||||||| | || | Sbjct 19773488 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 19773547 Query 135852 TTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATC 135911 | ||||| ||||| |||| ||| |||| ||||||||||| || ||||| || ||||||| Sbjct 19773548 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 19773607 Query 135912 CTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATG 135971 | || |||||||| || || ||||| || ||||| ||||| || ||| ||||||||||| Sbjct 19773608 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 19773667 Query 135972 GATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATG 136031 | || | || ||||||||| | | | || || ||||| ||||| || | | Sbjct 19773668 GTTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 19773727 Query 136032 GTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCG 136091 |||||| || |||||||| ||||||||||| || ||||| || ||||||||||| || | Sbjct 19773728 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 19773787 Query 136092 GTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTG 136151 | || | |||||||||||||| || ||||||||||| || ||||||| ||| | | Sbjct 19773788 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGG 19773847 Query 136152 CTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCA 136211 |||||||||||| || || || ||||| |||| | || | ||| ||||| |||| Sbjct 19773848 TTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 19773907 Query 136212 ACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACA 136271 | || || |||||||| |||||||| || | || | ||||||| || | | | Sbjct 19773908 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTA 19773967 Query 136272 CCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 | | ||| ||| | | || |||||| ||| |||||||| || |||||||| ||| Sbjct 19773968 CTTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGT 19774023 >seq8 Length=28014461 Score = 589 bits (652), Expect = 3e-163 Identities = 736/1006 (73%), Gaps = 6/1006 (1%) Strand=Plus/Minus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 |||| |||||| | | | || || ||||| ||||| || |||||||| ||| | |||| Sbjct 17889475 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 17889416 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||||||||| || | || || ||| |||| || ||||| ||||| || | Sbjct 17889415 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 17889356 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054 |||| ||||| || |||||| | ||| | ||||| |||||| | || ||||| | Sbjct 17889355 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGCAGCAG 17889296 Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114 |||| || ||||| || | | | || ||| | | ||||| ||||| || || | | Sbjct 17889295 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 17889236 Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 |||| ||| | || |||| ||| | || || || ||||||||||| || ||||| | Sbjct 17889235 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 17889176 Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGC 138233 |||| ||| || || || |||||| | || || ||||| | |||| |||| | | Sbjct 17889175 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTT---C 17889119 Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291 | | || || || || ||||| |||||||||| || |||||||| || || ||| | Sbjct 17889118 AATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTAT 17889059 Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351 ||||||| ||||| |||| |||||| ||||||||||||| || ||||| || |||| Sbjct 17889058 TCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAG 17888999 Query 138352 CAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTC 138411 | || || |||||| | | ||| | || || || ||||| ||||| | ||||| |||| Sbjct 17888998 CGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTC 17888939 Query 138412 ATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTA 138471 |||||||||| || || || | | || | |||||||| || ||||||||||| || | Sbjct 17888938 ATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAA 17888879 Query 138472 CAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAAC 138531 | || ||||| ||| | | ||| || || || ||||||| || || ||| | | Sbjct 17888878 CCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACC 17888819 Query 138532 CTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCT 138591 | ||||||| |||||||| ||||| ||||| || ||||| || | ||||| ||||||| Sbjct 17888818 CAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGGTCCCAAATCT 17888759 Query 138592 TTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCA 138651 |||| |||||||| ||||| |||||| | || ||||||||||| ||||| || |||| Sbjct 17888758 TTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCA 17888699 Query 138652 TGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATG 138711 ||| | |||| ||| |||||| | | || || ||||| |||||||| || |||| Sbjct 17888698 CCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATG 17888639 Query 138712 ATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCA 138771 | ||||| || || ||||| |||||||| |||||||||||||| ||||| |||||||||| Sbjct 17888638 ACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCA 17888579 Query 138772 AGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACG 138831 | || |||||| | || || ||| | ||||| |||||||| || |||||| ||||| | Sbjct 17888578 AAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATG 17888519 Query 138832 AAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 |||| || | || ||||| || || | ||| | || |||||||| Sbjct 17888518 AAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 17888473 >seq4 Length=20076173 Score = 288 bits (318), Expect = 1e-72 Identities = 401/559 (72%), Gaps = 6/559 (1%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 |||| |||||| | | | || || ||||| ||||| || |||||||| ||| | |||| Sbjct 17460163 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 17460222 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||||||||| || | || || ||| |||| || ||||| ||||| || | Sbjct 17460223 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 17460282 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054 |||| ||||| || |||||| | ||| | ||||| |||||| | || ||||| | Sbjct 17460283 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGCAGCAG 17460342 Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114 |||| || ||||| || | | | || ||| | | ||||| ||||| || || | | Sbjct 17460343 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 17460402 Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 |||| ||| | || |||| ||| | || || || ||||||||||| || ||||| | Sbjct 17460403 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 17460462 Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTC-GTCTGGTAGGC 138233 |||| ||| || || || |||||| | || || ||||| | ||| ||||| | | Sbjct 17460463 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTT---C 17460519 Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291 | | || || || || ||||| |||||||||| || |||||||| || || ||| | Sbjct 17460520 AATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTAT 17460579 Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351 ||||||| ||||| |||| |||||| ||||||||||||| || ||||| || |||| Sbjct 17460580 TCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAG 17460639 Query 138352 CAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTC 138411 | || || |||||| | | ||| | || || || ||||| ||||| | ||||| |||| Sbjct 17460640 CGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTC 17460699 Query 138412 ATATGATGGGCGTAGCAGG 138430 |||||||||| || || || Sbjct 17460700 ATATGATGGGAGTTGCCGG 17460718 >seq6 Length=36134596 Score = 100 bits (110), Expect = 4e-16 Identities = 147/204 (72%), Gaps = 12/204 (6%) Strand=Plus/Plus Query 135483 TCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGT 135542 ||||||| |||| | |||||||| || || | ||| || | ||||| || | | Sbjct 31663506 TCGCTGCCTCTCCAATAGATATTGATGGTATTTGTGAATCT-----TAGTTCTTTACTTT 31663560 Query 135543 ACGGAAATAAC---ATCATCTCTGGTGCTGTTATCCCTTCTAGCAACG-CCATCGGCCTT 135598 || ||| ||| || ||||||||||| || | ||| || | ||| | ||| | | Sbjct 31663561 AC--AAAAAACGATATTATCTCTGGTGCCATTGTTCCTACT-TCTACGACGATCAGATTA 31663617 Query 135599 CACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCT 135658 ||| | || || || ||||||||||| ||| ||||||||||| |||| |||||||||||| Sbjct 31663618 CACCTTTACCCGATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCT 31663677 Query 135659 TATCAACTAGTGGTCTTCCACTTC 135682 ||| | ||| | || | |||||| Sbjct 31663678 TATGAGCTAATTGTTCTACACTTC 31663701 >seq9 Length=29411429 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 136081 TGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACA 136140 |||||| || || || | |||||||||||||| || |||||||||||||| |||| Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 136141 CTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTAC 136200 ||| ||| | |||||||||||||| || || || ||||| |||| | || | ||| Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 136201 GATGGCGTTCAACCTCAA 136218 ||||| ||||| || || Sbjct 9641772 TATGGCTTTCAATCTTAA 9641755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627967905804800