Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq2 531 1e-146 seq9 86.0 2e-12 seq6 86.0 2e-12 >seq2 Length=21549876 Score = 531 bits (588), Expect = 1e-146 Identities = 705/976 (72%), Gaps = 2/976 (0%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || ||||| ||||| ||||| | || ||||| || || | ||||| ||| Sbjct 19773079 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 19773138 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | || ||| || ||||| ||||||| ||||| || || || |||||| Sbjct 19773139 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 19773198 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || |||||||| ||||| || || ||| | ||||||||||||||||| ||| Sbjct 19773199 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCT 19773258 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | |||| | || || || ||| |||||||||| || || |||||||| Sbjct 19773259 GGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 19773318 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | || | ||||||||||||||||| || ||||| ||| | || |||| | |||||| Sbjct 19773319 GCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTC 19773378 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| | || ||||| || ||| | |||||||||| || | | | || ||| Sbjct 19773379 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 19773438 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| || |||||| |||| || | |||| ||| |||||| ||||| Sbjct 19773439 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTT 19773497 Query 19719 G-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTAC 19777 | ||||||| |||| ||||| ||||| ||||||||||||| | || || |||||||| Sbjct 19773498 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 19773557 Query 19778 TTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACAT 19837 ||| ||||||||| | |||||||| ||||| || || |||||||||||||| || ||||| Sbjct 19773558 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 19773617 Query 19838 GCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGT 19897 | | ||||| ||||| |||||||| || || || ||| ||||||||| || ||||| Sbjct 19773618 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 19773677 Query 19898 TACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTT 19957 || || | || | |||||| ||||| | | ||| || | || || | || Sbjct 19773678 AACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATT 19773737 Query 19958 CGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGAT 20017 || ||||| |||||||| ||||||||||| || || || || || ||||| |||| || Sbjct 19773738 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 19773797 Query 20018 ATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCC 20077 || ||||||||| ||| || || ||||| |||||||| ||||| | | | ||| || Sbjct 19773798 CTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGGTTGCTTGGCC 19773857 Query 20078 CGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGG 20137 || || || || ||| | || | | || || | |||||||||||||| || || || Sbjct 19773858 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 19773917 Query 20138 TTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGA 20197 || || || ||||| || ||||||||| | | || | || | || | |||||| Sbjct 19773918 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTACTTTGGCTGA 19773977 Query 20198 TGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTT 20257 | | | || | ||||| || || | ||||| |||||||| || |||||||| ||||| Sbjct 19773978 TATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 19774037 Query 20258 CCCACTTGATTTAGCT 20273 ||| || || ||||| Sbjct 19774038 CCCTCTAGACCTAGCT 19774053 >seq9 Length=29411429 Score = 86.0 bits (94), Expect = 2e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 19998 GGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACAT 20057 || || ||||| |||| || || ||||||||| ||| || || |||||||||||||| Sbjct 9641891 GGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACAC 9641832 Query 20058 TTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACT 20117 ||||| | ||| ||| || || || || || ||| | || | | || || | ||| Sbjct 9641831 TTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACT 9641772 Query 20118 ATGGCTTTCAACCTTAA 20134 ||||||||||| ||||| Sbjct 9641771 ATGGCTTTCAATCTTAA 9641755 >seq6 Length=36134596 Score = 86.0 bits (94), Expect = 2e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 19463 AAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTA 19522 |||| ||||||| ||||| || | ||||| | || | | || || | ||| |||| Sbjct 31663566 AAACGATATTATCTCTGGTGCCATTGTTCCTACTTCTACGACGATCAGATTACACCTTTA 31663625 Query 19523 TCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACT 19582 ||||| |||||||| | || | ||||||||||||||||| || ||||| ||| | || Sbjct 31663626 CCCGATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCT 31663685 Query 19583 TGTTGTCTTCCACTTCTTAATAGGAGTAGC 19612 |||| | ||||||||| | | ||||| Sbjct 31663686 AATTGTTCTACACTTCTTACTTGATGTAGC 31663715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144441579417072