Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 3e-15 seq6 95.1 3e-14 seq5 95.1 3e-14 seq3 84.2 6e-11 >seq1 Length=42845077 Score = 98.7 bits (108), Expect = 3e-15 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || | ||| | |||||| | || | Sbjct 6095718 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTTTGAAGGAATGTGCTGTCATAAGC 6095777 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || |||||||||||||| | |||||| |||| || || | || || || Sbjct 6095778 AAATCTGCTGGAGGAATTGGTGTATCAGTTCACAATATTCGAGCTACTG-GGAGCTATAT 6095836 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| ||| ||| |||||| | ||||| ||||| ||||| || | |||| Sbjct 6095837 CCGTGGAACAAATGGAACCTCCAATGGGATTGTTCCTATGCTACGTGTTTTCAATGATAC 6095896 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || |||||||| ||| | |||||| Sbjct 6095897 TGCCCGTTATGTTGATCAAGGTGGAGGCAAGAG-AAAGGG 6095935 >seq6 Length=36134596 Score = 95.1 bits (104), Expect = 3e-14 Identities = 131/183 (72%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 371100 GCACCATGACTAATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGT 371159 || |||||| ||| || | ||| |||||||||| |||| |||||||||||||||||| Sbjct 24181585 GCGCCATGAGCAATCATACAGTCCCTCTCCATCTCTCCAAACCGGAGACCACCATCGCGT 24181526 Query 371160 GACCGTCCTTCTGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGG----TTGCGTGC 371215 || || || |||| || | ||||||| ||| | ||| ||| | | ||| Sbjct 24181525 GAGCGCCCCTCTGCAGGTTGTCTGGTAAGTATCTGCACAGGACCACGGCCTCTAGAGTGA 24181466 Query 371216 ATGTGACTTGTCAACTACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAAT 371275 || ||||||| | ||||||||||| || | ||| |||||| ||| ||| ||||| Sbjct 24181465 AT----CTTGTCATCCACCATGTGCTTAAGTCTCTGGTAATAAGTAGGACCAAGGAAAAT 24181410 Query 371276 CAT 371278 ||| Sbjct 24181409 CAT 24181407 >seq5 Length=35065507 Score = 95.1 bits (104), Expect = 3e-14 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACT-TAAGAATTGTGCTCTTATTTC 363680 ||||| || ||| ||| ||||| || | ||| || || | ||||| ||||| || Sbjct 33030426 ATGAAAGATGATAGCATTGAGGGAATTTATGATACTCTCTCAGAAT-GTGCTACCATAAG 33030484 Query 363681 CAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACA 363739 ||| ||| || ||||||||| | || || |||||| || | || || | ||||||| Sbjct 33030485 CAAATGTGCTGGTGGAATTGGTCTCTCAATTCACAATATTAGAGCTACTGGG-AGTTACA 33030543 Query 363740 TTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 |||| || ||| ||| || |||||| | ||||||||||| ||||| || | ||| Sbjct 33030544 TTCGAGGAACAAATGGAACATCTAATGGGATTGTTCCCATGCTGCGTGTTTTCAATGATA 33030603 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||| | || || || || || ||||| ||| | ||||| Sbjct 33030604 CTGCACGTTATGTTGATCAAGGCGGAGGCAAGAGAAAAGG 33030643 >seq3 Length=24378308 Score = 84.2 bits (92), Expect = 6e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 111701 CCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| | |||| ||| || ||||| |||||||| || ||||||||||| Sbjct 4018045 CCAGTTTTATGTTGAGAGCGGGGAGCTATCGTGCCAGATGTATCAACGCTCTGCTGATAT 4017986 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || ||||||||||| || || |||||| || | || || || | | | || ||||| Sbjct 4017985 GGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTTCTGACATACATGATTGCTCA 4017926 Query 111821 TTTT 111824 | || Sbjct 4017925 TGTT 4017922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353399609384