Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq8 82.4 6e-11 >seq8 Length=28014461 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 ||||||||| |||||||| || | || || |||||||||||| | || ||||| Sbjct 24290771 AATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTC 24290830 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| || ||||| |||||| ||| ||| || || || ||| | ||| |||| Sbjct 24290831 AGACACAATT-GACAACGTAAAAGCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATC 24290889 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| |||| || | || ||||| || | || |||| | || | || ||||| | Sbjct 24290890 AGCAGCGACTGATCTTGGCTGGCAAGCAGCTCGAGGATGGCCGCGCCTTAGCAGATTACA 24290949 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||| || || ||||| || | || ||||| Sbjct 24290950 ACATCCAGAAGGAGTCCACCTTGCACCTGGTG 24290981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425343937793440