Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10 136 3e-27 seq9 131 1e-25 >seq10 Length=24717764 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||| ||||||||||||||||||||||||||||| || |||||||| Sbjct 997966 AAGCCCGTTCCCTTCGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 997907 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 997906 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 997872 >seq9 Length=29411429 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 25119294 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 25119235 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 25119234 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 25119200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947151013972