Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5 143 2e-29 seq7 109 5e-19 seq8 100 2e-16 >seq5 Length=35065507 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| |||| || |||||||| Sbjct 30648860 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTCGAGTCGTCG 30648801 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || ||||| || |||||||| Sbjct 30648800 GACACGATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCTCCTGACCAG 30648741 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || ||| || ||| |||||||| Sbjct 30648740 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACAGTCGGACCCTGGCTGATTACAAC 30648681 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 30648680 ATTCAGAAAGAGTCCACTCTTCACCTTGTGCTTAGGCTGAGGGGAGG 30648634 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| |||| || ||||| ||| Sbjct 30649088 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCT 30649029 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | || | ||| ||||| || || |||||||||||||| Sbjct 30649028 GATACAATTGATGATGTGAAGGCCAAGATTCAA-GACAAGGAGGGCATTCCACCTGACCA 30648970 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||| ||||| ||| |||| |||| ||||| | | |||||||| Sbjct 30648969 GCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAA 30648910 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || ||| | || || ||||| Sbjct 30648909 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTACGCCTCAGGGGAGG 30648862 >seq7 Length=28646061 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | || || ||||||||| Sbjct 24916348 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCGTCT 24916407 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || |||||||| ||||| Sbjct 24916408 GACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 24916467 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| |||||| | | |||||||| Sbjct 24916468 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCAGATTACAAC 24916527 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 24916528 ATCCAGAAGGAGTCCACCCTGCA 24916550 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || || ||||||||| Sbjct 26600736 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 26600795 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| ||||| || || || || || |||| Sbjct 26600796 GACACCATTGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACC 26600853 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||| ||||| || | || || | ||||| | | ||| |||| Sbjct 26600854 AGCAGCGTCTCATCTTTGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACA 26600913 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || || || ||||| || || | ||||| ||||| || || || Sbjct 26600914 ACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGTGG 26600962 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | || || || |||| || | || || ||||| || Sbjct 24915892 ATGCAAATATTCGTGAAGACCCTCACTGGCAAGACCATTACCCTGGAGGTCGAGTCCTCC 24915951 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || ||||| ||||| Sbjct 24915952 GACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 24916011 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | || |||| ||||| | | || ||||| Sbjct 24916012 CAGCGTCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTTGCAGACTACAAC 24916071 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || ||||| |||||||| || || Sbjct 24916072 ATCCAAAAGGAATCCACCCTGCA 24916094 >seq8 Length=28014461 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || | || || ||||| ||| Sbjct 24289903 ATGCAGATCTTTGTGAAGACACTCACTGGCAATACCATAACCCTAGAGGTTGAGTCCTCT 24289962 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | | || || | || || | ||| ||||| || || |||||||||||| Sbjct 24289963 GACACAACTCA--CAATGTCAAGGCCAAGATTCAG-GACAAGGAGGGTATTCCACCTGAC 24290019 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| ||||| ||| | || || | ||||| | | |||||| Sbjct 24290020 CAGCAGCGCCTCATCTTTGCGGGCAAGCAACTTGAGGACGGACGCACCCTCGCAGATTAC 24290079 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || |||| ||||| ||||| || || | || || | || || ||||||| Sbjct 24290080 AACATTCGGAAAGAGTCCACCCTCCACCTTGTCCTTCGCCTCAGGGGAGGAA 24290131 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || || |||| || | || || ||||| || Sbjct 22387133 AATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACCATTACGCTTGAGGTTGAGTCATC 22387192 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| || ||| ||||| || || ||||| || || || Sbjct 22387193 AGACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 22387252 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||||||||||||||| || | || |||| | || | | || ||||| Sbjct 22387253 GCAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACCCTCGCTGACTACAA 22387312 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||||| || || | || || | ||||| || |||| Sbjct 22387313 CATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCGCCTAAGGGGTGGAA 22387362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327936625780