Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 5e-14 seq10 89.7 6e-13 seq9 87.8 2e-12 seq7 87.8 2e-12 seq6 87.8 2e-12 seq5 87.8 2e-12 seq8 84.2 2e-11 >seq1 Length=42845077 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 6405994 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 6405935 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||| ||||||| Sbjct 6405934 GTGGGTTCAAATCCCACTTCTGAC-AATTATT 6405904 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/105 (79%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 42235090 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 42235147 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||| || |||||| ||| || |||| || ||||||| || Sbjct 42235148 GGGTTCAAATCCCACAGCTGTCA---TATTTTTCTAATTTTTCTT 42235189 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 36073933 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 36073876 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| || | | ||||| Sbjct 36073875 TTCAAATCCCACAACTGTCACAATTTTATT 36073846 >seq10 Length=24717764 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/90 (83%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 5280711 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 5280770 Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATT 126351 |||||||| || ||||| |||||| |||| Sbjct 5280771 GTGGGTTCAAATCCCACTTCTGACATAATT 5280800 >seq9 Length=29411429 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 22970973 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 22970914 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 22970913 GCGTGGGTTCAAATCCCACTTCTGACA 22970887 >seq7 Length=28646061 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 13126525 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 13126468 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| |||||| || Sbjct 13126467 TTCAAATCCCACAGCTGTCAAATTTTT 13126441 >seq6 Length=36134596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/89 (83%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 33619483 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 33619542 Query 126324 TGGGTTCGAACCCCACACCTGACA-AATT 126351 ||||||| || ||||| |||||| |||| Sbjct 33619543 TGGGTTCAAATCCCACTTCTGACATAATT 33619571 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/109 (80%), Gaps = 7/109 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| || | ||| Sbjct 3111674 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCTAACGAGGGCG 3111733 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGA--ATTTTTGTTG 126370 ||||||| || ||||| ||||||| |||| || || |||||| ||| Sbjct 3111734 TGGGTTCAAATCCCACTTCTGACAA--TATT-TTCGATCATTTTTTTTG 3111779 >seq5 Length=35065507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 34515921 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 34515862 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 34515861 GCGTGGGTTCAAATCCCACTTCTGACA 34515835 Score = 82.4 bits (90), Expect = 9e-11 Identities = 79/98 (81%), Gaps = 5/98 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 19577145 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 19577088 Query 126328 TTCGAACCCCACACCTGACAAAT-TATTATTGGAATTT 126364 ||| || |||||| ||| ||| | |||| || ||||| Sbjct 19577087 TTCAAATCCCACAGCTGTCAATTCTATTTTT--AATTT 19577052 >seq8 Length=28014461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 19601899 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 19601956 Query 126328 TTCGAACCCCACACCTGACAAATTATTATT 126357 ||| || |||||| ||| ||| || || || Sbjct 19601957 TTCAAATCCCACAGCTGTCAATTTCTTTTT 19601986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860716470880