Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9 425 1e-113 >seq9 Length=29411429 Score = 425 bits (470), Expect = 1e-113 Identities = 541/734 (74%), Gaps = 28/734 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || |||||||| ||| ||||||||||| Sbjct 8531143 CTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATG 8531084 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||||||| ||||||||| |||||||| ||||| |||||| Sbjct 8531083 TCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGATTCCAGATCGCCATCGAGAAC 8531024 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | || ||||||| || || |||| Sbjct 8531023 ATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAG 8530964 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG-AAGGCGGACTGGGC 42661 || |||||||| ||||| || || | ||| || | | ||||| |||||||| Sbjct 8530963 GACCGGCTGTTCCGCGCCATCGACACCGT-CCCGGCCGTGCGCCGCAAGGCCGACTGGGC 8530905 Query 42662 GCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | ||||||||| | ||| ||| |||| |||| | || || ||||| || Sbjct 8530904 CATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCCT 8530849 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 ||||||||| ||||||||||||||| ||||| | ||||||||||||||||| || || Sbjct 8530848 GCGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGG 8530789 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| Sbjct 8530788 GGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACT 8530729 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| ||||||||||| | ||| || |||| | |||| ||||| ||| ||| Sbjct 8530728 GCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGGCGCG 8530674 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| | ||| || | || ||||| || ||||||| ||||||| || | |||| Sbjct 8530673 CGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGCT 8530614 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||||| | || |||||||||||| |||||||||| || |||||||| ||| |||||| Sbjct 8530613 CCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGC 8530554 Query 43019 CGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC------CTCTACAAC-ACGCCGTGCC 43071 ||||| ||||| |||| ||| || || | |||||| |||| || Sbjct 8530553 CGACCGCCTCCT------CATGGCGCTCGGCTGCAAGAAGATGTACAACGTCGCC-AACC 8530501 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 ||||||||| |||||| ||| || || |||||||||||||||| ||||||||||||| Sbjct 8530500 CCTTCGACTGGATGGAGCTCATATCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCG 8530441 Query 43132 TCGCCGACTACCAG 43145 ||| |||||||||| Sbjct 8530440 TCGGCGACTACCAG 8530427 Score = 379 bits (420), Expect = 4e-100 Identities = 530/729 (73%), Gaps = 18/729 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| ||||| || ||||| || |||||||| ||| ||||||||||| Sbjct 1286430 CTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATG 1286489 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||| ||| |||||||||||||||||| ||||| |||||| Sbjct 1286490 TCCGACGTGCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 1286549 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | |||||||||| || ||||||| Sbjct 1286550 ATCCACTCGGAGATGTACTCGCTTCTGCTCGAGACGTACATCCGCGACGACGTCGAGAAG 1286609 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||||| || || | ||| | | ||||| |||||||| Sbjct 1286610 GACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCC 1286669 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | |||||||| | ||| ||| |||| |||| |||| || ||||| || Sbjct 1286670 ATGCGATGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGGCTCGTCGCCTTCGCCTG 1286725 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGG 42780 ||||||||| |||||||||||||| | ||| | ||||||||||||||||| || || Sbjct 1286726 CGTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCATCTTCTGGCTCAAGAAGCGCGG 1286785 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || ||||| || ||||||||||| ||||| |||||| | | |||||||| || || Sbjct 1286786 ACTC-ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACT 1286844 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| ||||||||||| | ||| || |||| | |||| ||||| || || Sbjct 1286845 GCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGTCACG 1286899 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 |||| || ||| || | || |||||||| ||||||| ||||||| || | |||| Sbjct 1286900 CGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCT 1286959 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||||| | || ||||| |||||| ||| |||||| || |||||||| ||| |||||| Sbjct 1286960 CCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGC 1287019 Query 43019 CGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTGCCCCTTC 43076 ||||| || || || | |||| || | | |||||| |||| ||| ||| Sbjct 1287020 CGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAG-ATGTACAACGTCGCC-AACCCGTTC 1287077 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| |||||| |||||| || |||||||||||||||| |||||||||||||||| | Sbjct 1287078 GACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGC 1287137 Query 43137 GACTACCAG 43145 ||||||||| Sbjct 1287138 GACTACCAG 1287146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944339058349120