Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq8 93.3 3e-14 seq5 87.8 1e-12 seq1 87.8 1e-12 seq12 82.4 6e-11 seq7 82.4 6e-11 seq6 82.4 6e-11 >seq8 Length=28014461 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || | ||| ||||||||| |||||||||||||| || || Sbjct 24290989 AGACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGCGCGG 24290930 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| || || ||||| |||||||||||| || | || ||| Sbjct 24290929 CCATCCTCGAGCTGCTTGCCAGCCAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCC 24290870 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| | | | ||||||| | || | | || | || || || | || Sbjct 24290869 TTGTCC-TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGT 24290811 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || ||||| ||||| | ||| || ||||||||||||||| Sbjct 24290810 AATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 24290771 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || || || || ||||| ||| ||||||||| |||||||| || || Sbjct 22387132 CCTCCCCTTAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC- 22387074 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || || | |||||||| ||||| ||||| |||||||| ||| | Sbjct 22387073 AAGGGTC-CTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGG 22387015 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | ||| |||||| || ||| ||||| | | | |||||| ||| || Sbjct 22387014 GAATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAA 22386955 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || || | || || |||||||||||||| Sbjct 22386954 CCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 22386906 >seq5 Length=35065507 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| ||||| || ||||| ||| ||| ||||||||||||||||| ||| Sbjct 30648634 CCTCCCCTCAGCCTAAGCACAAGGTGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCC 30648693 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || ||| || | |||||||||||||| || || |||||||| || Sbjct 30648694 AGGGTCCGACTGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTC 30648746 Score = 82.4 bits (90), Expect = 6e-11 Identities = 97/128 (76%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||| || || || ||| ||||||||| |||||||| || || || ||| | Sbjct 3012358 AGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTC-C 3012415 Query 33970 T--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCT 34027 | | || |||| |||||||| ||||| || ||||||||||||||| || | || || Sbjct 3012416 TGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGATCCGGGGGAATGCCCT 3012475 Query 34028 CTTTGTCC 34035 | |||||| Sbjct 3012476 CCTTGTCC 3012483 >seq1 Length=42845077 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || ||||| ||||||||| |||||||| || |||| ||| Sbjct 24053825 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGC 24053766 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || || |||||||| ||| ||| | | ||| Sbjct 24053765 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCC 24053706 Query 34030 TTGTCC 34035 |||||| Sbjct 24053705 TTGTCC 24053700 >seq12 Length=20407407 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || |||| ||||| || |||||||||||||||||| || ||| Sbjct 12157701 CCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGCC 12157642 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | ||| | || |||| ||||||||||| ||||||| ||||| ||||| Sbjct 12157641 AGTGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAATATCAAACGCTGTTGATC 12157589 >seq7 Length=28646061 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || ||||| ||||| ||| ||||||||| |||||||| || ||| Sbjct 26601190 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 26601131 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || |||| ||||||||||| || || || |||||||| ||| || Sbjct 26601130 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 26601071 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 26601070 ATACCCTCCTTGTCC 26601056 >seq6 Length=36134596 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| ||||||||| ||||||||| |||||||| || |||| || Sbjct 8965764 AGGCGAAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGG 8965705 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || |||| ||||| ||||| || || ||||||||||| ||| Sbjct 8965704 CCATCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCC 8965660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062341929624