Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9 154 3e-32 >seq9 Length=29411429 Score = 154 bits (170), Expect = 3e-32 Identities = 307/452 (68%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||||| | ||||| || || || | || || || ||| Sbjct 8530876 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 8530817 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 8530816 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 8530757 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| |||||||||||||| ||| | |||| || | || ||| Sbjct 8530756 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 8530697 Query 243469 CAGAACAAGCTACCATTCGAAACG---GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||| | | ||| || ||| | ||| || | || || || || | | Sbjct 8530696 CGCGGCAAGCT-CGA--CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 8530640 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || | ||| ||| | |||||||| | || | ||| | ||||||||| || ||| Sbjct 8530639 GAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTC 8530580 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| Sbjct 8530579 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCGCTCGGCTGCAAGAAG 8530520 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 |||||||| | |||||||| | || ||||||||||| || || || || || || Sbjct 8530519 ATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATATCCCTGCAGGGCAAGACC 8530460 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 8530459 AACTTCTTCGAGAAGCGCGTCGGCGACTACCA 8530428 Score = 145 bits (160), Expect = 2e-29 Identities = 305/452 (67%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 || || ||||| |||||||||| | ||||| || || || | || || || ||| Sbjct 1286697 TTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATTC 1286756 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 1286757 TGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAG 1286816 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 ||||| ||||||||||| || ||| | |||| || | || ||| Sbjct 1286817 CTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 1286876 Query 243469 CAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAAC 243525 | |||||| || | || ||| ||| | | ||| || | || || || || | | Sbjct 1286877 CGCGGCAAGCTCGACGAGTC---ACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATC 1286933 Query 243526 GAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTC 243585 || | ||| ||| | |||||||| | || | ||| | || |||||| || ||| Sbjct 1286934 GAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTC 1286993 Query 243586 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAA 243645 ||| | ||||||||||| ||||| |||||||| | |||| ||||| || | |||| Sbjct 1286994 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAG 1287053 Query 243646 GTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACT 243705 |||||||| | ||||| || | || ||||||||||| || || || || || || Sbjct 1287054 ATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACC 1287113 Query 243706 AACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 ||||||||||| ||||| ||| | || || || Sbjct 1287114 AACTTCTTCGAGAAGCGCGTCGGCGACTACCA 1287145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879830432200