Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 3e-15 seq7 93.3 4e-14 seq5 87.8 2e-12 >seq8 Length=28014461 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || || ||||| | | ||| || |||| || || ||||| ||||| || ||||| ||| Sbjct 24290998 CCACCACGGAGACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCT 24290939 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || ||| || | || || || || | |||| ||| ||||| ||||| || Sbjct 24290938 AA-GGCGCGGCCATCCTCGAGCTGCTTGCCAGCCAAGATCAGTCGCTGCTGATCCGGGGG 24290880 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 |||||| || || || ||||| ||| ||| | || | || | ||||| || ||||| | Sbjct 24290879 AATGCCCTCCTTGTCCTGAATCTTTGCTTTTA-CGTTGTCAATTGTGTCTGACGACTCAA 24290821 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || |||| ||||||||||| | || || ||||| |||||||| Sbjct 24290820 CCTCCAGGGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 24290772 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 ||||| || | |||||| | |||||| || || || || ||||| |||||||| || || Sbjct 24290773 ATTCCACCCCTGAGCCTGAGCACTAGGTGAAGGGTAGACTCCTTGTGGATATTGTAGTCA 24290714 Query 45170 GCTGACG-GTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 || | | | | | || || | || || || ||| | || || || ||||||||| Sbjct 24290713 GCCGGGGCGCGTCCG--TCCTCGAGCTGCTTGCCGGCGAAGATGAAGCGCTGCTGGTCCC 24290656 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || ||||| || || || ||||| || || | || | || || ||||||| Sbjct 24290655 GGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACT 24290596 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| || || |||| || || ||||| || || || |||||||| ||||| Sbjct 24290595 CGACCTCAAGCGTAATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 24290544 >seq7 Length=28646061 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||| | ||| || || || || || ||||| ||||| || || ||| Sbjct 26600288 ATGCCTCCCCTGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 26600229 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | || | || ||||||||||| Sbjct 26600228 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGG 26600169 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || |||| || | |||||| || ||||| Sbjct 26600168 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCA 26600109 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| || || || ||||| || |||||| Sbjct 26600108 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 26600058 >seq5 Length=35065507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || || ||||| ||||| || || || Sbjct 3013056 ATGCCACCACGGAGGCGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCA 3013115 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| || || || ||| | || | || ||||||||||| Sbjct 3013116 GCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGG 3013175 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || |||||||| || || |||| || | |||||| || ||||| Sbjct 3013176 GGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGAGGACTCC 3013235 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| | || || ||||| || |||||| Sbjct 3013236 ACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCATC 3013286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || |||| || || ||||| ||||| || ||||| Sbjct 30648406 CCACCACGGAGGCGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCC 30648465 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | || || || ||| | ||||| || ||||||||||| ||| Sbjct 30648466 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 30648525 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || || || || | || | || | || | |||||||| || Sbjct 30648526 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTATGAGAAGACTCAAC 30648584 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| || |||||||| || || || |||||||| ||||| Sbjct 30648585 CTCAAGCGTAATGGTCTTGCCGGTCAGGGTCTTGACAAAAATCTGCAT 30648632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || || || || || || ||||| ||||| || ||||| Sbjct 30648859 ATGCCTCCCCTGAGGCGTAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCC 30648918 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | ||| || || || | || | ||||||||||| || Sbjct 30648919 GCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGT 30648978 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || |||||||| || || | | || | || || || ||||| Sbjct 30648979 GGAATGCCCTCCTTGTCTTGAATCTTGGCCTTCACATCATCAATTGTATCAGAGGACTCA 30649038 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || ||||| || || || || ||||| || |||||| Sbjct 30649039 ACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATC 30649089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003132199520