Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq2 661 0.0 seq8 522 3e-143 seq4 269 3e-67 seq5 123 3e-23 seq9 104 3e-17 seq6 86.0 8e-12 >seq2 Length=21549876 Score = 661 bits (732), Expect = 0.0 Identities = 741/988 (75%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 19774056 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 19773997 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 | ||||||||||| | || ||| | || | | || |||||||| | ||||| | Sbjct 19773996 ATTAGCACGGTTGATGATATCAGCCAAAGTAGTAATAACGCGACCTTGGCTATCAACTAC 19773937 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 || |||||||| ||||| ||||| || ||||| ||||| || |||| ||| | |||||| Sbjct 19773936 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 19773877 Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773 |||||| || || || || ||||| || | | ||||||||| | || || |||||||| Sbjct 19773876 GAACCAAATCCCTACTACAGGCCAAGCAACCAAGAAGAAGTGTAAAGATCGAGAGTTGTT 19773817 Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833 || ||| ||||||||||| | || ||||| || || ||||| || || || || || Sbjct 19773816 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 19773757 Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTC 7893 |||||||| |||||||| || | ||||| | || || || ||||||||||| Sbjct 19773756 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 19773697 Query 7894 ACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAA 7953 | || || | ||||||||| | ||||||||||| |||||||| || ||||| || || Sbjct 19773696 CCTAATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 19773637 Query 7954 GACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 8013 |||||||| || || | |||||| || || ||||| |||||||| |||||||| ||||| Sbjct 19773636 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAA 19773577 Query 8014 GACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACC 8073 |||| ||| ||||||| |||||||| || || | ||||||| | ||||||||| || Sbjct 19773576 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCC 19773517 Query 8074 TTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGC 8133 |||||| | ||| || | | ||| ||||||| || || ||||| ||||| || ||||| Sbjct 19773516 TTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 19773457 Query 8134 TACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 ||| ||||| ||||||||||| |||||| || |||||||||||||||||||| || Sbjct 19773456 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATA 19773397 Query 8194 TGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAG 8253 | | ||| | | |||||| | | || || | |||||||||| ||||| | Sbjct 19773396 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAA 19773337 Query 8254 CCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGA 8313 ||||||||||| ||| || |||||||| || || || ||||| | || || || ||| Sbjct 19773336 CCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGA 19773277 Query 8314 AGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGG 8373 || ||||| || ||||||||||| || ||||| || || | | ||||||| || || Sbjct 19773276 AGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGG 19773217 Query 8374 TTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAA 8432 ||||| || || ||||| || || ||||| ||||||| ||| |||| || || ||| | Sbjct 19773216 CTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA 19773157 Query 8433 TAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGAT 8492 || || | | | ||||| ||||||| ||||||||||| |||| || ||||| | Sbjct 19773156 -AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGT 19773098 Query 8493 TGTTGGTGGAGGTTACCCAGTTACAGAA 8520 | | |||| |||| |||||| ||||| Sbjct 19773097 TTTCGGTGCTAGTTATCCAGTTGCAGAA 19773070 >seq8 Length=28014461 Score = 522 bits (578), Expect = 3e-143 Identities = 728/1015 (72%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || |||||||| || |||||| Sbjct 17888473 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 17888532 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | ||||||||| ||||| | ||| || || || || || || ||||| ||||| ||| Sbjct 17888533 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTC 17888592 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 17888593 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 17888652 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || || || || || | | ||||| | |||| | ||| | || || ||||| Sbjct 17888653 TTCAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCGGTACAAAT 17888712 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 |||||||||||||||| |||||| |||||| || || | ||||||||| || ||||| Sbjct 17888713 AGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAA 17888772 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || |||||||| |||||||| ||||| || || || |||| || || | ||| || | Sbjct 17888773 AAGCGATTAGCGGTGACCATGGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCGCGG 17888832 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| ||||| || ||||| | ||| || || || || || || |||||| Sbjct 17888833 AAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCCCATGAATA 17888892 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || |||| || | ||||| | || || || |||||||||||||| ||||| | | Sbjct 17888893 GCGCATAGCAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAAC 17888952 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | |||||| | ||| || ||||||||||| || ||||| Sbjct 17888953 GTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAAA 17889012 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 ||||||||||||||||| ||| || || || ||||| || || || || || ||||| Sbjct 17889013 CTCGGCGCAAAGAACCAACCGGATTGCCCCAGTGGATAAATCAGGAATACGGAAACAAAA 17889072 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 ||||| || || ||||| || | |||||||| || || || | | || ||| || || Sbjct 17889073 ACAGCGATTGGGCCAGAGAATGAAATTGCATTATAAGGCCGCA-ATTGAACAGACCGAGC 17889131 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | |||||||||||| || ||||| || || ||||| || ||||| Sbjct 17889132 AAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCAACAAA 17889191 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || || || | ||| ||| || ||||| || || ||||| || ||||| Sbjct 17889192 AGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCCGGGCCCCA 17889251 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 ||| || | | || ||| | | | | ||||| || || || || || || | ||| Sbjct 17889252 TAGTAGCAACAAAGAGTGTGCTAAACTATTGGCAGGGGTGGAAACTGCTGCGGTTAAGAA 17889311 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 ||| || || || | ||| ||| || | || || || ||||| || || ||||| Sbjct 17889312 ATTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGGTATACCAAGAAGTTACAAAAGT 17889371 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 ||| || || | |||||| || | || | |||||| ||| || || | || || || Sbjct 17889372 TGTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAAAGCAATAGGCCAGA 17889431 Query 7222 CCAACCAACAAAAACGAACCTATCAC-GCTTAAGCCAGTCATCGAGTACATCAAA 7275 ||| || |||||||| || | || | | ||| |||||| || | | |||||| Sbjct 17889432 CCATCCTACAAAAACAAAACGGTCCCTTCGTAA-CCAGTCGTCCATAATATCAAA 17889485 >seq4 Length=20076173 Score = 269 bits (298), Expect = 3e-67 Identities = 411/580 (71%), Gaps = 4/580 (1%) Strand=Plus/Minus Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 || ||||| | || || || |||||||||||||| ||||| | |||||| || || || Sbjct 17460730 CCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAAT 17460671 Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAAC 6817 || || | |||||| | ||| || ||||||||||| || ||||| ||||||||||||| Sbjct 17460670 CCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAAC 17460611 Query 6818 CAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCA 6877 |||| ||| || || || ||||| || || || || || ||||| ||||| || || ||| Sbjct 17460610 CAACCGGATTGCCCCAGTGGATAAATCAGGAATACGGAAACAAAAACAGCGATTGGGCCA 17460551 Query 6878 GAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGCGATCTCAAACTGCCG 6936 || || | |||||||| || || || | | || ||| || || | ||||| || || Sbjct 17460550 GAGAATGAAATTGCATTATAAGGCCGCA-ATTGAACAGACCGAGCAAGTTCAAATTGACG 17460492 Query 6937 AAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCC 6996 | |||||||||||| || ||||| || || ||||| || ||||||| ||| || || || Sbjct 17460491 TAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCAACAAAAGTCCACAGACCACC 17460432 Query 6997 AAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGA 7056 | ||| ||| || ||||| || || ||||| || |||||||| || | | || Sbjct 17460431 TAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCCGGGCCCCATAGTAGCAACAAAGA 17460372 Query 7057 ATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAAATTACATCCCTCAAG 7116 ||| | | | | ||||| || || || || || || | |||||| || || || | Sbjct 17460371 GTGTGCTAAACTATTGGCAGGGGTGGAAACTGCTGCGGTTAAGAAATTGCAACCTTCCAA 17460312 Query 7117 ATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCA 7176 ||| ||| || | || || || ||||| || || |||||||| || || | ||| Sbjct 17460311 ATAGGAACTCGCCAATCCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCA 17460252 Query 7177 ACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGACCAACCAACAAAAAC 7236 ||| || | || | |||||| ||| || || | || || ||||| || |||||||| Sbjct 17460251 ACCTCCTAAAGCGAAATAAGCACAAGGAAAAAGCAATAGGCCAGACCATCCTACAAAAAC 17460192 Query 7237 GAACCTATCAC-GCTTAAGCCAGTCATCGAGTACATCAAA 7275 || | || | | ||| |||||| || | | |||||| Sbjct 17460191 AAAACGGTCCCTTCGTAA-CCAGTCGTCCATAATATCAAA 17460153 >seq5 Length=35065507 Score = 123 bits (136), Expect = 3e-23 Identities = 129/168 (77%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 7555 GTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGCACGTC 7614 || |||||||||||| ||||| || |||||||| ||||| |||||||||| | || Sbjct 15425870 GTGGTGAGCATTACGTTCGTGAATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 15425929 Query 7615 TGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAACC 7674 ||||| || || | || |||||||| | ||||| | || |||||||| ||||| || Sbjct 15425930 AGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGA-TGGTTGAAATTGAACCC 15425988 Query 7675 GTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGAT 7722 || || ||||| ||||| || |||| ||| | |||||||||||| || Sbjct 15425989 ATTTAGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCAAAT 15426036 >seq9 Length=29411429 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 7676 TTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACAACTGGC 7735 || || ||||| ||||| || |||| ||| | |||||||||||| || || || || ||| Sbjct 9641755 TTAAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACAGGC 9641814 Query 7736 CATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGATC 7795 || || || | ||||||||| | ||||| |||||||| || ||| ||||||||||| Sbjct 9641815 CAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATT 9641874 Query 7796 AGACGACCAAAGTATCC 7812 | || ||||| || || Sbjct 9641875 AATCGGCCAAAATAACC 9641891 >seq6 Length=36134596 Score = 86.0 bits (94), Expect = 8e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 8235 AAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGT 8294 |||||||||| ||||| | ||||||||||| ||| || |||||||| || || || | || Sbjct 31663678 AAGGACCACCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATCGGGTAAAGGT 31663619 Query 8295 GGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTT 8346 | | | || | |||||| |||||||| ||||||||||| || | ||| Sbjct 31663618 GTAATCTGATCGTCGTAGAAGTAGGAACAATGGCACCAGAGATAATATCGTT 31663567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622124706681280