Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9 172 7e-38 >seq9 Length=29411429 Score = 172 bits (190), Expect = 7e-38 Identities = 321/458 (70%), Gaps = 20/458 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 1287143 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1287084 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| ||||| | | |||| Sbjct 1287083 CCAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTG-CACCCGAG-CGCCATGAGC 1287029 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| |||| ||||||| ||| ||| |||||| |||| ||| Sbjct 1287028 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 1286969 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| |||| || |||| |||||||| || || ||||| Sbjct 1286968 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGAT 1286910 Query 127465 GGCGTGAATA-GTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAG 127520 | || | ||| | | || | | ||| | | ||| | || ||| || | Sbjct 1286909 CTCCTGGACGCGTGACTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-G 1286854 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 | || || ||||||||||||||| ||||||||||| || || |||||| || || | Sbjct 1286853 CGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCG 1286794 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 ||||||| || |||||||| | |||||| || || || ||||| || ||||||||||||| Sbjct 1286793 GCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCC 1286734 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 |||| || || ||||| || | || |||||||| ||| Sbjct 1286733 CCTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 1286696 Score = 154 bits (170), Expect = 2e-32 Identities = 317/459 (69%), Gaps = 22/459 (5%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT--CTCC 127288 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||||| |||| Sbjct 8530430 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGG--GATATGAGCTCC 8530487 Query 127289 ATAAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGA 127343 || | || || ||||| | ||| | || || ||| || || | | ||| Sbjct 8530488 ATCCAGTCGAAGGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGA 8530542 Query 127344 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 127403 |||| || || | |||| |||| ||||||| ||| || |||||| |||| || Sbjct 8530543 GGAGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGA 8530602 Query 127404 G-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACG 127462 | | || ||||||||||| ||| |||| || |||| ||||| || || || ||| Sbjct 8530603 GCGCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACG 8530661 Query 127463 ATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACA 127519 || || | | || | | | | ||| | | ||| | || ||| || Sbjct 8530662 ATCTCGCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CAG- 8530718 Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 || || || ||| || |||||||| ||||||||||| || || |||||| || || Sbjct 8530719 GCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCC 8530778 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| ||||||||||| | |||||| || || || || ||||| |||||||||||| Sbjct 8530779 GGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATC 8530838 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||||| || || ||||| || | || |||||||| ||| Sbjct 8530839 CCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 8530877 Score = 131 bits (144), Expect = 2e-25 Identities = 283/418 (68%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || ||||| || | || ||||| || || || |||| || | |||| Sbjct 28828258 ACGGTGACCTGCCGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGC 28828317 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 | ||| ||||| |||| |||| || || | | | | | || ||||||||||||||| Sbjct 28828318 CTGTTTGTCGCGGCGAGCACAATGACACCGCTATTGCCAGCAAATCCATCCATCTCAGTC 28828377 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCA-TTCGCGGGCATACCACCCGCACTGCG 12868 ||||| || || ||||| || || | |||||| ||| | | | | || |||| || Sbjct 28828378 AAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACG 28828436 Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC 12928 ||| | |||||||| |||||||| |||||||| ||||| || || || | ||| Sbjct 28828437 CTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 28828496 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 || || | || | || || |||||||||||| || |||| ||| || || | Sbjct 28828497 CTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTC 28828556 Query 12989 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 13048 || |||| || || ||| || || || || || |||| ||| || || || || Sbjct 28828557 GGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAG 28828616 Query 13049 GGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 13105 |||||||| || || || || |||| | |||| | | | |||||| |||| || Sbjct 28828617 TGTCTTCCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 28828673 Score = 100 bits (110), Expect = 3e-16 Identities = 229/342 (67%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 10504 CCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAG 10563 |||||| | || || ||| ||| | || | | ||||| || || || ||| | Sbjct 1971720 CCCTTCCACCCGCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCCCACTGGTACACCGTC 1971779 Query 10564 AATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTCA 10623 || || ||||| |||| || ||||| | ||| ||| | |||||||||||||| || Sbjct 1971780 AACTACCGCGAGGCCTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAACCACGAATCC 1971839 Query 10624 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTG 10683 || || || ||| | | ||||| || ||||||||| | || | |||| | Sbjct 1971840 CCACGCCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCGTCGGCCGAATCAAG 1971899 Query 10684 G-CGGGTG--AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGA 10740 | |||| ||| || || | | || |||||| ||||| |||||||||||| Sbjct 1971900 GTCGGGCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGGGACTGGGGA 1971956 Query 10741 CACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAA 10800 |||| |||||| || || || ||||||| | | || || || || || | | ||| Sbjct 1971957 TTCGCCGGGGACTACGTCGAGGCAATGTGGCGCATGCTGCAGCAGGACAAGCCCGGCGAC 1972016 Query 10801 TATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 10842 || |||||||| || | |||| | ||| ||||| ||||||| Sbjct 1972017 TACGTCGTCGCCACCGAGGAGTCCCACACCGTCGAGGAGTTC 1972058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507107973920