Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq6 241 1e-57 seq3 120 2e-21 seq4 100 2e-15 seq5 98.7 8e-15 >seq6 Length=36134596 Score = 241 bits (266), Expect = 1e-57 Identities = 705/1076 (66%), Gaps = 20/1076 (2%) Strand=Plus/Minus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 |||| || || |||||| |||||| || ||||| |||||||| | ||||| ||| Sbjct 33881824 GTTGTCTTGTCTTCGGCAGACACATTCAGGATACCGTTGGCATCAATGTCAAAGCAGACA 33881765 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 || |||||||| || || | ||||| ||||| || || | |||| | || || Sbjct 33881764 GTGATCTGAGGGACTCCCCTAGGGGCAGGAGGGATTCCAGACAGCTCAAATTTGCCAAGG 33881705 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 ||| || || | || | | | |||||||| | | || || || ||| Sbjct 33881704 AGATTGTTGTCCCTGGTCCGTGTCCTCTCACCCTCATAGACCTGAATCAACACACCAGGC 33881645 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT 517482 || ||||| || || || | || || ||| || || |||||| || ||||| || Sbjct 33881644 TGGTTATCGGAGTAGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCT 33881586 Query 517483 ATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 517542 || | ||||| | ||| || ||||| || | ||||||||| || ||||| || Sbjct 33881585 TGGGATGAGCACTGTCATCACACCTCCCGCTGTCTCGAGACCAAGAGACAGTGGAGTCAC 33881526 Query 517543 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 517602 ||||| || | || || || | || || | | ||| ||| ||||| || || Sbjct 33881525 ATCAAGGAGAAGAAGATCCTGCACCTTCTCGTTCCCCTCTCCACTAAGGATAGCAGCCTG 33881466 Query 517603 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTA 517660 | |||||||| ||||| |||||||||||||| |||| | || || |||| || Sbjct 33881465 GACGGCAGCACCGTATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTC 33881408 Query 517661 CCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACT 517720 |||||||| |||| ||||| || ||| |||| || | || ||| || ||||| Sbjct 33881407 CCATTGAAGAAATCCTGCAGAAGCTGCTGAACCCTAGGGATTCTAGTTGAACCACCAACA 33881348 Query 517721 AATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC 517779 | |||| ||||| || ||| | || |||| |||| |||| | || || || Sbjct 33881347 AGGACAACATCATGGACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCAC 33881289 Query 517780 GGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG 517839 || || | || || || | ||| ||| || || || | ||||| || | Sbjct 33881288 AGGCTCCATACATTTCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGAT 33881229 Query 517840 AGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGA 517899 ||| || |||||| || || || | ||||||| |||||| |||||||| | | Sbjct 33881228 GGTGGAATAGAAATCAACACCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGT 33881169 Query 517900 AGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC 517959 || || || | | || || | |||||||| ||| || || || | || || | | Sbjct 33881168 GGAGGAGAGGGTCCTCTTTGCCCTTTCACATGATGTTCTGAGCCTCCTCAAAGCCCTGG- 33881110 Query 517960 TGATTGATTC--AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA 518017 | || | | ||| | |||| ||||||||||| |||| ||| | | || Sbjct 33881109 -GGTTCCCGCTGATATCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACC 33881051 Query 518018 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 518077 || || || ||||| || || || || | | ||| | || | || ||| | || | Sbjct 33881050 AGGCGGTTGTCAAAGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCTTTCACCTCA 33880991 Query 518078 AAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAA 518137 |||| || || |||| | | || | |||||| || |||||||| | |||||| Sbjct 33880990 AAAATACCCTCCTCAATGGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAA 33880931 Query 518138 ATAAGTACATTCATTTCT-------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGC 518190 || || || ||| | || | ||| || || ||||||||||| |||| || Sbjct 33880930 ATGAGCACGTTCTTCTCACCAACACTAGTCGCC-TTCTTGTCAAGACCATAAGCAATTGC 33880872 Query 518191 AGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 518250 |||||| ||||| ||||| || || | || |||||||||||| ||||| |||||||| Sbjct 33880871 AGCAGCTGTTGGCTCATTGATGATACGCATAACATTAAGACCCGCAATAACACCTGCATC 33880812 Query 518251 TTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 |||||| || || || || ||||| || || |||||||||||||| | ||| |||| Sbjct 33880811 TTTAGTTGCCTGCCTCTGGGAATCATTGAAGTATGCAGGAACAGTGACAACAGCAT 33880756 >seq3 Length=24378308 Score = 120 bits (132), Expect = 2e-21 Identities = 224/328 (68%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 517985 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 518044 || |||||||| |||| ||| | | || | || || |||||||||||||| || Sbjct 24173653 TTCCTCTTGAATTCTTGCACAAAGTGGTTGACCATGCGGTTGTCAAAATCTTCACCACCA 24173594 Query 518045 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 518104 | | || | || | || || | || | || | || || |||| | | || Sbjct 24173593 AGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCTCAATGGTAAGGAGG 24173534 Query 518105 GTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--- 518161 | |||||| ||| ||||| || | ||||| || || |||||| | || | Sbjct 24173533 GAAACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCAACGCTG 24173474 Query 518162 -TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218 ||| || || ||||||||||| |||| ||| ||||||||||| || || || || | | Sbjct 24173473 GTGGCCTTCTTGTCAAGACCATAGGCAATAGCGGCAGCAGTTGGCTCGTTGATGATGCGC 24173414 Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278 | ||||| ||||||||||| ||| ||||| || ||||| || || || || || || Sbjct 24173413 ATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTG 24173354 Query 518279 AAATATGCAGGAACAGTAATAACGGCAT 518306 || || ||||||||||| | |||||||| Sbjct 24173353 AAGTAGGCAGGAACAGTGACAACGGCAT 24173326 >seq4 Length=20076173 Score = 100 bits (110), Expect = 2e-15 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| ||| || || |||| ||||| | ||| | || |||| |||| || | Sbjct 6747787 ACATCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TCGTTTCGTTGTTTT---TC 6747734 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| |||| | |||||||| || ||||| ||||| | | ||| | Sbjct 6747733 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTCGGCTCATTTATAATGCGGAGAACTTCC 6747674 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | || ||||| | ||| |||||||| || ||| || ||||| || || || |||||| Sbjct 6747673 AATCCTGCAATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAGTCATTGAAGTATGCA 6747614 Query 518288 GGAACAGTAA 518297 |||||||||| Sbjct 6747613 GGAACAGTAA 6747604 >seq5 Length=35065507 Score = 98.7 bits (108), Expect = 8e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | ||||||||||||||||||||| || || ||| |||| ||| |||||| Sbjct 31532144 CCATAAGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGTCCAGCA 31532203 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| || || || || | || | ||| |||||||| || ||||| ||| Sbjct 31532204 ATGCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTA 31532263 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330 || ||||| | | || |||||||| |||| Sbjct 31532264 ATCACGGCCTTTGAAACAGTTTTACCAAGGTAAG 31532297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821804520472