Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq9 127 2e-24 >seq9 Length=29411429 Score = 127 bits (140), Expect = 2e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 1286843 GTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCC 1286784 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || ||||||||||| || ||||||||||| ||||| || || Sbjct 1286783 GCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCCCTCGACGCA 1286724 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | || |||||||||||| Sbjct 1286723 GGCGAAGGCGACGAGCCGCTCGGCGAAG 1286696 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 8530730 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 8530789 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 8530790 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCA 8530849 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 8530850 GGCGAAGGCGACGAGGCGCTCGGCGAAG 8530877 Score = 123 bits (136), Expect = 3e-23 Identities = 274/406 (67%), Gaps = 4/406 (1%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || | || || ||||| ||||| | || || | |||| | || |||||| Sbjct 28828270 CGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGCCTGTTTGTCGCG 28828329 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 |||| |||| | ||| | | | |||| ||||||||||| ||||| || |||||| Sbjct 28828330 GCGAGCACAATGACACCGCTATTGCCAGCAAATCCATCCATCTCAGTCAAGAGCTGGTTA 28828389 Query 9312 ATAGTTTGTTCCCGTTCATCA-TTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9370 || || || |||| |||||| ||| | | | | ||||||| || ||| | || || Sbjct 28828390 ATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACGCTGCCTCCCGAC 28828448 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||||||| |||||||||||||| || || || || | ||| | || || || Sbjct 28828449 GGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGCCTTCTCGAACAG 28828508 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 || | ||||| ||| || ||||| || |||| ||| || || | | |||| || Sbjct 28828509 GTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTCGGACGCGGCGCA 28828568 Query 9491 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 || ||| || || | || || || | ||| || || || || ||||| || || Sbjct 28828569 GGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGTGTCTTCCCGGT 28828628 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 || ||| || |||| | |||| ||| | || |||||||| || Sbjct 28828629 TCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 28828673 Score = 104 bits (114), Expect = 3e-17 Identities = 229/340 (67%), Gaps = 14/340 (4%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| ||||||||| | | || || || || || |||| || || || | ||||| Sbjct 28672298 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 28672239 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||||||| |||| | || || | ||| || |||| ||||||||| | Sbjct 28672238 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 28672185 Query 9344 ACCACCAGCAC-TG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397 ||||||| || || | |||| | || || |||||||| ||||||| || || || Sbjct 28672184 ACCACCAATACCTGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTAT 28672125 Query 9398 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || ||| || || | | |||||||| ||||||| ||| || || || Sbjct 28672124 GCAAGGAGCATTCTCCTTTGCCTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACTCC 28672065 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9516 ||||||||||||||||| | | | | | || | || || || ||| || ||| | Sbjct 28672064 GACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAACGGCACACCAGCTTCCC 28672006 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | ||||| || ||| || | ||||||||| || || || Sbjct 28672005 CTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 28671966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980711502880