Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq2 547 8e-151 seq8 540 1e-148 seq4 291 9e-74 seq9 91.5 2e-13 seq6 82.4 9e-11 >seq2 Length=21549876 Score = 547 bits (606), Expect = 8e-151 Identities = 718/989 (73%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 167863 TTCTGCGAGTGGGTAAC-ATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 |||||| | ||| |||| | || | || ||||| || || |||| |||||||| || | Sbjct 19773070 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATCGGATGGTTCGGTGTTTT 19773128 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 |||||| || || | ||| | |||||| ||||| || || |||||||| ||||||| | Sbjct 19773129 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCC 19773187 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || || || || || ||||| || || ||||||| | | || || |||| Sbjct 19773188 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACA 19773247 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCA 168100 | || ||||||||||| || | ||| ||||| || || ||| | ||||| || || | Sbjct 19773248 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 19773307 Query 168101 TCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAG 168160 | |||||||| ||||| | ||||||||||| || || |||||||||| | ||| | | Sbjct 19773308 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTG 19773367 Query 168161 TCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATC 168220 | | |||||| | | ||| | | || ||||| ||||| |||||||| | | Sbjct 19773368 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 19773427 Query 168221 GTTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTG 168280 || | ||||||||||| ||||| ||||||||| || || || || || || || | || Sbjct 19773428 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 19773487 Query 168281 CAGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAA 168340 | || ||| | | || ||| | |||||||| ||||||||||||| ||||| | |||| Sbjct 19773488 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 19773547 Query 168341 TCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATC 168400 | || || || ||||||| ||| | || ||||| || ||||| || || || ||||||| Sbjct 19773548 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 19773607 Query 168401 CCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACG 168460 | || || ||| | || || ||||| ||||| || || | || ||||||||||| | Sbjct 19773608 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 19773667 Query 168461 GAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACG 168520 | ||||| || ||| | | |||| || || ||||||| |||||| || | | Sbjct 19773668 GTTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 19773727 Query 168521 GTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCG 168580 |||||| || || ||||| ||||| || || || || || |||||||||||||| || | Sbjct 19773728 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 19773787 Query 168581 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTG 168640 | || || ||||||||||| ||| || |||||||| || || || ||||||||| | | Sbjct 19773788 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGG 19773847 Query 168641 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 168700 ||| |||||||| || || || |||||||| || | || | || ||||| |||| Sbjct 19773848 TTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 19773907 Query 168701 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 168760 | || ||||| ||||| |||||||| || | ||||| | || ||||| || | | | Sbjct 19773908 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTA 19773967 Query 168761 CCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 168820 | | ||| ||| | | ||||| ||| ||| ||||||||||| ||||| || ||||| | Sbjct 19773968 CTTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 19774027 Query 168821 CACACAACTTCCCACTCGATCTTGCTGCT 168849 | ||||||||||| || || || |||||| Sbjct 19774028 CTCACAACTTCCCTCTAGACCTAGCTGCT 19774056 >seq8 Length=28014461 Score = 540 bits (598), Expect = 1e-148 Identities = 730/1016 (72%), Gaps = 6/1016 (1%) Strand=Plus/Minus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | || |||||| | | | ||||| ||||| || | || |||||||| Sbjct 17889485 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 17889426 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | ||| |||| ||| ||| | ||| | ||||| ||| | || || ||| | ||| Sbjct 17889425 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 17889366 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTC 169483 || ||||| ||||| ||||| ||| | || |||| || || ||||| || ||| Sbjct 17889365 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCC---TATTTGGAAGGTTGCAATTTC 17889309 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || || || || || ||||| | | | | |||||| || | | |||||| Sbjct 17889308 TTAACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGG 17889249 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 || || ||||||||||| ||||| ||| ||||||||||| |||||||| |||| ||| Sbjct 17889248 GGCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTT 17889189 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || || || ||||| || |||||| | || ||||||||| | | || |||||| | || Sbjct 17889188 GTTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCT 17889129 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 || | || | || ||||||||||| ||| |||||||||| || || ||||| ||| Sbjct 17889128 CGGTCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTT 17889069 Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783 || || || || || || ||||| || || ||| ||||||||||| || ||| Sbjct 17889068 GTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTT 17889009 Query 169784 GGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTG 169843 || ||| |||| || || | ||| | | ||| | |||||||| || || ||||||||| Sbjct 17889008 GGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTG 17888949 Query 169844 AATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATC 169903 || ||||| || |||||||| || || ||| | || |||| || |||| | ||||| Sbjct 17888948 AACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATT 17888889 Query 169904 CATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAG 169963 ||||| | || || || ||||| | | ||| |||||||| |||||||| ||| Sbjct 17888888 CATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGC 17888829 Query 169964 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 170023 || ||| | | || || | ||||| |||||||| |||||||| || || ||||| ||| Sbjct 17888828 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGG 17888769 Query 170024 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTT 170083 || || ||||| ||| |||| ||||| || || |||||| | ||||| || ||| | ||| Sbjct 17888768 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 17888709 Query 170084 GTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 170143 || || || | ||| | |||| |||||||| | | ||||| ||||| || || Sbjct 17888708 GTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTA 17888649 Query 170144 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACC 170203 ||||| || || ||||| ||||| ||| | ||||| |||||||| ||||||||||| Sbjct 17888648 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 17888589 Query 170204 TTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGAT 170263 |||||||||||||| || || || || || || ||||||| ||| ||||| || ||| Sbjct 17888588 TTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGAT 17888529 Query 170264 CAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 || || |||||||| | || ||||| || || ||||| || | || ||||| || Sbjct 17888528 CAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 17888473 >seq4 Length=20076173 Score = 291 bits (322), Expect = 9e-74 Identities = 414/581 (71%), Gaps = 6/581 (1%) Strand=Plus/Plus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | || |||||| | | | ||||| ||||| || | || |||||||| Sbjct 17460153 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 17460212 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | ||| |||| ||| ||| | ||| | ||||| ||| | || || ||| | ||| Sbjct 17460213 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 17460272 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTC 169483 || ||||| ||||| ||||| ||| | || |||| || || ||||| || ||| Sbjct 17460273 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCC---TATTTGGAAGGTTGCAATTTC 17460329 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || || || || || ||||| | | | | |||||| || | | |||||| Sbjct 17460330 TTAACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGG 17460389 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 || || ||||||||||| ||||| ||| ||||||||||| |||||||| |||| ||| Sbjct 17460390 GGCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTT 17460449 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || || || ||||| || |||||| | || ||||||||| | | || |||||| | || Sbjct 17460450 GTTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCT 17460509 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 || | || | || ||||||||||| ||| |||||||||| || || ||||| ||| Sbjct 17460510 CGGTCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTT 17460569 Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783 || || || || || || ||||| || || ||| ||||||||||| || ||| Sbjct 17460570 GTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTT 17460629 Query 169784 GGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTG 169843 || ||| |||| || || | ||| | | ||| | |||||||| || || ||||||||| Sbjct 17460630 GGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTG 17460689 Query 169844 AATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGG 169884 || ||||| || |||||||| || || ||| | || ||||| Sbjct 17460690 AACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGG 17460730 >seq9 Length=29411429 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 168570 TGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCA 168629 |||||| || || || || ||||||||||| ||| || |||||||| || || || || Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 168630 CTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCAC 168689 ||||||| | ||||| |||||||| || || || |||||||| || | || | || Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 168690 GATGGCATTCAACCTGAA 168707 ||||| ||||| || || Sbjct 9641772 TATGGCTTTCAATCTTAA 9641755 >seq6 Length=36134596 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 168037 AACAACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTAT 168096 ||| | || ||||||||||| |||| ||| |||||| | || || | ||| | || Sbjct 31663567 AACGATATTATCTCTGGTGCCATTGTTCCTACTTCTACGACGATCAGATTACACCTTTAC 31663626 Query 168097 CCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTA 168156 || || |||||||| ||||| | ||||||||||| || || |||||||||| | ||| Sbjct 31663627 CCGATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTA 31663686 Query 168157 GTAGTCTTTCACTTC 168171 | || | |||||| Sbjct 31663687 ATTGTTCTACACTTC 31663701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574473513828960