Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq2 643 1e-179 seq8 585 3e-162 seq4 338 7e-88 seq9 104 3e-17 >seq2 Length=21549876 Score = 643 bits (712), Expect = 1e-179 Identities = 739/989 (75%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 163785 TTCTGCGAATGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTG 163844 |||||| | ||| | ||| ||| | ||||| || || | || |||||||| ||| || Sbjct 19773070 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19773129 Query 163845 ATGATCCCTACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163902 ||||||||||| || ||| | ||||| ||||| || || |||||||| ||||||| | Sbjct 19773130 ATGATCCCTAC-CTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCC 19773187 Query 163903 CCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACA 163962 | || || || || |||||||||||||| |||||| | ||||| | | || || |||| Sbjct 19773188 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACA 19773247 Query 163963 ACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCA 164022 | || ||||||||||| || |||| | || || || || | ||||| ||||| | Sbjct 19773248 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 19773307 Query 164023 TTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCG 164082 |||||||||| ||||| ||||||| ||| | ||||| |||||||||| | || | | Sbjct 19773308 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTG 19773367 Query 164083 TCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTGTCTTACC 164142 | | |||||| | | ||| | | || ||||||||||||||||||||| || || Sbjct 19773368 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 19773427 Query 164143 GTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCG 164202 |||| |||||||||||||||||| |||||| || || || || |||||||| || | | Sbjct 19773428 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 19773487 Query 164203 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCA 164262 | || ||| || | || ||| | |||||||| |||||||| | ||||| | || | Sbjct 19773488 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 19773547 Query 164263 TCTCTGGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACC 164322 | ||||| || ||||||| ||| | || ||||| |||||||| |||||||| ||||| | Sbjct 19773548 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 19773607 Query 164323 CCTTCCATATGCTCGGCGTTGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164382 | || || ||| | || || ||||| ||||| |||||||| || |||||||| ||||| | Sbjct 19773608 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 19773667 Query 164383 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATG 164442 |||| |||| || ||| || || | |||||||| |||| || || || | | Sbjct 19773668 GTTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 19773727 Query 164443 GTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTG 164502 |||||| ||||||||||| ||||| || || || ||||| |||||||| ||||| |||| Sbjct 19773728 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 19773787 Query 164503 GTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 164562 | || | ||||||||||| ||| || |||||||| || || || ||||||||| | | Sbjct 19773788 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGG 19773847 Query 164563 CTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCA 164622 ||| |||||||| || || || |||||||| || | ||| || || ||||| |||| Sbjct 19773848 TTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 19773907 Query 164623 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164682 | || ||||| ||||| |||||||| || | | ||| | || ||||| || | | | Sbjct 19773908 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTA 19773967 Query 164683 CTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACG 164742 ||| ||| || | ||||||| ||| ||| ||||||||||| |||||||| ||||| | Sbjct 19773968 CTTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATG 19774027 Query 164743 CTCACAACTTCCCTCTGGATCTCGCTGCT 164771 |||||||||||||||| || || |||||| Sbjct 19774028 CTCACAACTTCCCTCTAGACCTAGCTGCT 19774056 >seq8 Length=28014461 Score = 585 bits (648), Expect = 3e-162 Identities = 736/1004 (73%), Gaps = 6/1004 (1%) Strand=Plus/Minus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 || |||||| | | | || ||||| |||||||| || |||||||| || | |||||| Sbjct 17889473 GACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 17889414 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||||||| | ||| | || |||||| |||| ||||| ||||| | || |||| Sbjct 17889413 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 17889354 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 165383 ||||| || || ||||| ||||||||| |||| ||| |||| ||||||| | || |||| Sbjct 17889353 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCAGCAG 17889296 Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 165443 |||| || || || | | | | || ||| | |||| || ||||| || || || | Sbjct 17889295 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 17889236 Query 165444 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 165503 |||||||||| | ||| ||| | || || || ||| ||||||| || ||||| | Sbjct 17889235 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 17889176 Query 165504 GGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGGT 165562 ||||||| || ||||| ||||||||| | ||||| |||||| | || || ||| || | Sbjct 17889175 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 17889116 Query 165563 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 165622 | || || || ||||| ||| | |||||||| || ||||||||||||||| ||| || Sbjct 17889115 -TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTC 17889057 Query 165623 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCA 165682 || || || || ||||| ||||| ||||||| || || || ||| || || ||||| Sbjct 17889056 CTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCG 17888997 Query 165683 ATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCAT 165742 || || | ||| | |||||| | |||||||| ||||| ||||| ||||| || |||||| Sbjct 17888996 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 17888937 Query 165743 ATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACA 165802 |||||||| ||||| || | | || | || |||| | || || ||||| | || Sbjct 17888936 ATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACC 17888877 Query 165803 GTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCT 165862 || || || ||||| | | | || ||||| | ||||||||| ||| || ||| || | Sbjct 17888876 GTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCA 17888817 Query 165863 ACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTC 165922 ||||||| |||||||| || || ||||| || || || || || ||||| || ||||| Sbjct 17888816 ACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTT 17888757 Query 165923 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 165982 ||| |||| ||| ||||| | ||||| |||||||||||||| ||||| || || | Sbjct 17888756 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACC 17888697 Query 165983 GGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 166042 ||| | |||| ||| | || || | | || || ||||| ||||| ||||| |||||| Sbjct 17888696 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATGAC 17888637 Query 166043 TTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAA 166102 || || ||||| || ||| | ||||| ||||| || || ||||| || |||||||| ||| Sbjct 17888636 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 17888577 Query 166103 AACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAG 166162 || ||||| || || || ||| ||||||| ||| ||||| | ||||| || ||||| Sbjct 17888576 AATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 17888517 Query 166163 AACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 || || | |||||||| || ||||| || | || ||||| || Sbjct 17888516 AATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 17888473 >seq4 Length=20076173 Score = 338 bits (374), Expect = 7e-88 Identities = 413/557 (74%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 || |||||| | | | || ||||| |||||||| || |||||||| || | |||||| Sbjct 17460165 GACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 17460224 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || ||||||| | ||| | || |||||| |||| ||||| ||||| | || |||| Sbjct 17460225 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 17460284 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 165383 ||||| || || ||||| ||||||||| |||| ||| |||| ||||||| | || |||| Sbjct 17460285 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCAGCAG 17460342 Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 165443 |||| || || || | | | | || ||| | |||| || ||||| || || || | Sbjct 17460343 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 17460402 Query 165444 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACG 165503 |||||||||| | ||| ||| | || || || ||| ||||||| || ||||| | Sbjct 17460403 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 17460462 Query 165504 GGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCAC-GTCTCATCGGT 165562 ||||||| || ||||| ||||||||| | ||||| |||||| | || | |||| || | Sbjct 17460463 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 17460522 Query 165563 ATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTT 165622 | || || || ||||| ||| | |||||||| || ||||||||||||||| ||| || Sbjct 17460523 -TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTC 17460581 Query 165623 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCA 165682 || || || || ||||| ||||| ||||||| || || || ||| || || ||||| Sbjct 17460582 CTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCG 17460641 Query 165683 ATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCAT 165742 || || | ||| | |||||| | |||||||| ||||| ||||| ||||| || |||||| Sbjct 17460642 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 17460701 Query 165743 ATGATGGGTGTTGCAGG 165759 |||||||| ||||| || Sbjct 17460702 ATGATGGGAGTTGCCGG 17460718 >seq9 Length=29411429 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 164493 GGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCAC 164552 ||||| ||||| || | ||||||||||| ||| || |||||||| ||||| || ||| Sbjct 9641891 GGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACAC 9641832 Query 164553 TTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACG 164612 |||||| | ||||| |||||||| || || || |||||||| || | ||| || || Sbjct 9641831 TTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACT 9641772 Query 164613 ATGGCATTCAACCTGAA 164629 ||||| ||||| || || Sbjct 9641771 ATGGCTTTCAATCTTAA 9641755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556924716461280