Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq2 572 2e-158 seq6 89.7 6e-13 >seq2 Length=21549876 Score = 572 bits (634), Expect = 2e-158 Identities = 719/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| ||||| | ||| | ||||| | || ||||||||||| || Sbjct 19773070 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19773129 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || || ||||| || Sbjct 19773130 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCC 19773188 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | || ||||| | ||| || || | || |||||||| Sbjct 19773189 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 19773248 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||| ||||| || |||| |||| || ||||| | ||||| |||||||| Sbjct 19773249 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 19773308 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||| || | | |||||||||||||| |||||||||||||| || | | | Sbjct 19773309 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 19773368 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || || |||||| | |||||||| | | | | Sbjct 19773369 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 19773428 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| | |||||||| |||||| |||||||| || || | || || ||| Sbjct 19773429 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 19773488 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | ||||| ||||||| || ||||||||||||||||||| ||||||| Sbjct 19773489 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 19773548 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 ||||| || |||||||| ||| | |||||||| |||||||| ||||| ||||||||||| Sbjct 19773549 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCC 19773608 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || || ||| ||| ||||| ||| | ||||| || || |||||| || |||||||| Sbjct 19773609 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 19773668 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | || || || || ||||| | |||||| || | || Sbjct 19773669 TTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGGG 19773728 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| || |||||||| ||||| || ||||||||||| || || ||||| || || || Sbjct 19773729 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 19773788 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 ||||||||||||| ||||| ||||| |||||||| || | | ||||||||| | | Sbjct 19773789 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGGT 19773848 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| | | ||||| || || | ||||| |||| ||||| ||||| Sbjct 19773849 TGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 19773908 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 | |||||||| || || |||||||| || || ||| | ||| | ||| |||| Sbjct 19773909 TCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTAC 19773968 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 | || ||| | | ||| | || || |||||||||||||||||||| || ||||| || Sbjct 19773969 TTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 19774028 Query 169450 TCACAACTTCCCACTAGACTTAGC 169473 |||||||||||| |||||| |||| Sbjct 19774029 TCACAACTTCCCTCTAGACCTAGC 19774052 >seq6 Length=36134596 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 168664 AAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTA 168723 |||| | || ||||| ||||| ||||||| |||| | | ||| | ||||| | || Sbjct 31663566 AAACGATATTATCTCTGGTGCCATTGTTCCTACTTCTACGACGATCAGATTACACCTTTA 31663625 Query 168724 CCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777 ||| ||||||||||| || | | |||||||||||||| |||||||||||||| Sbjct 31663626 CCCGATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTA 31663679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564441515333760