Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq2 581 4e-161 seq8 580 1e-160 seq4 340 2e-88 seq9 91.5 2e-13 >seq2 Length=21549876 Score = 581 bits (644), Expect = 4e-161 Identities = 727/991 (73%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 181794 TTCTGCGAGTGGGTTACATCTACCAACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTG 181853 |||||| | ||| | || ||| | || ||||| || |||| ||||| ||||| || Sbjct 19773070 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19773129 Query 181854 ATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 181912 |||||||| || | ||| | ||||| ||||| || || | || ||| | || || || Sbjct 19773130 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 19773188 Query 181913 TCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTCACTCATGTATGGTAACAA 181972 ||| || ||||| || ||||| || || || || ||||||| | | || || ||||| Sbjct 19773189 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 19773248 Query 181973 CATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGGTCTTCACTTCTACCCAAT 182032 || ||||||||||| || | || | || || || || | ||||| |||||||| Sbjct 19773249 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 19773308 Query 182033 CTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGT 182092 ||||||||||| || ||||||||||| | || || |||||||||| | || |||| Sbjct 19773309 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 19773368 Query 182093 TTTCCACTTCCTGATCGGCATCTACGCCT---ACATGGGACGTGAGTGGGAACTTTCTTA 182149 | | |||||| | | || | || || | | ||||| |||||||||||||| || Sbjct 19773369 TCTACACTTCTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTT 19773425 Query 182150 CCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATC 182209 ||| | ||||||||||| ||||| ||| ||||| || ||||| || || || || | Sbjct 19773426 CCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTAC 19773485 Query 182210 TGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGG 182269 |||||| ||||| | || ||| | |||||||| ||||| |||| ||||| | || Sbjct 19773486 TGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGG 19773545 Query 182270 AATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCA 182329 ||| || || || ||||||| |||| | || ||||| || ||||| ||||| |||||||| Sbjct 19773546 AATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCA 19773605 Query 182330 TCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCA 182389 ||| || |||||||| |||||||| ||||||||||| ||||| || || ||||| ||||| Sbjct 19773606 TCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCA 19773665 Query 182390 CGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTA 182449 ||||| ||||| || ||| | | | || || ||||| | || || || | Sbjct 19773666 TGGTTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGA 19773725 Query 182450 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTT 182509 ||||||| || |||||||| |||||||| ||||| || || || || ||||| || || Sbjct 19773726 GGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTT 19773785 Query 182510 CGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 182569 || || || ||||||||||| || || |||||||| || || || ||||||||| | Sbjct 19773786 TGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTT 19773845 Query 182570 TGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATT 182629 | ||| |||||||| || || || |||||||| || | ||| | || ||||| || Sbjct 19773846 GGTTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTT 19773905 Query 182630 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAA 182689 ||| || ||||| ||||| |||||||| || | ||||| | || ||||| || ||| Sbjct 19773906 CAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAC 19773965 Query 182690 CACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 182749 |||| ||| ||| | | ||||||||| ||||||||||||||| ||||| || ||||| Sbjct 19773966 TACTTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAA 19774025 Query 182750 CGCACACAACTTCCCACTAGATCTTGCTGCT 182780 || ||||||||||| ||||| || |||||| Sbjct 19774026 TGCTCACAACTTCCCTCTAGACCTAGCTGCT 19774056 >seq8 Length=28014461 Score = 580 bits (642), Expect = 1e-160 Identities = 735/1008 (73%), Gaps = 2/1008 (0%) Strand=Plus/Minus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 || |||||| | | | || || ||||| ||||| || |||||||| || | ||| || Sbjct 17889473 GACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 17889414 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||||||| | || | || |||||| |||| || ||| ||||||| || |||| Sbjct 17889413 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 17889354 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCTGT 183371 |||||||||||| | || ||||||| | |||||| || ||||||| | ||||| || Sbjct 17889353 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCAGCAGT 17889295 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || ||||| | | | | || ||| | || |||| ||||| || || | || Sbjct 17889294 TTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCACA 17889235 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 |||||| ||| || ||||| ||| | || || || |||| |||||| || ||||| || Sbjct 17889234 AGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATGG 17889175 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551 || ||||| || || ||||||||| | || || |||||||||||||| | || | Sbjct 17889174 GGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATT 17889115 Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611 || ||||| ||||| ||| | |||||||| || || ||||||||||| |||||||| Sbjct 17889114 GCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTCCT 17889055 Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 183671 || ||||||||||| || || ||||||||||| || ||||| || |||||||| || Sbjct 17889054 GATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGAT 17888995 Query 183672 CTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATAT 183731 ||| ||||| | | ||| | || || || || || |||||||| ||||| || ||||| Sbjct 17888994 ATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 17888935 Query 183732 GATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGT 183791 |||||||||||| || || |||| | || || || | ||||| ||||| | || || Sbjct 17888934 GATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGT 17888875 Query 183792 AGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCAC 183851 || || || | | ||| || || || ||||| || ||| || ||| | | || Sbjct 17888874 GGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAAC 17888815 Query 183852 TCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGG 183911 ||||| ||||| || ||||| ||||| || || ||||| || ||||| |||||||| || Sbjct 17888814 TCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTTGG 17888755 Query 183912 GGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGG 183971 ||||| ||| |||||| |||||||| || ||||||||| | ||||| || |||| || Sbjct 17888754 TGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACCGG 17888695 Query 183972 TCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTT 184031 | | ||| | | |||||||| | | || || ||||| || || ||||| ||||| || Sbjct 17888694 TTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATGACTT 17888635 Query 184032 TGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAA 184091 || || || ||| | ||||| |||||||| ||||||||||| |||||||| || || Sbjct 17888634 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 17888575 Query 184092 CATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAA 184151 || ||| | || || || | ||||| ||| | ||| || ||||| || ||||| || Sbjct 17888574 TATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAA 17888515 Query 184152 TTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 | ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 17888514 TCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 17888467 >seq4 Length=20076173 Score = 340 bits (376), Expect = 2e-88 Identities = 417/567 (74%), Gaps = 2/567 (0%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 || |||||| | | | || || ||||| ||||| || |||||||| || | ||| || Sbjct 17460165 GACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 17460224 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||||||| | || | || |||||| |||| || ||| ||||||| || |||| Sbjct 17460225 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 17460284 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCTGT 183371 |||||||||||| | || ||||||| | |||||| || |||||| || ||||| || Sbjct 17460285 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCAGCAGT 17460343 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || ||||| | | | | || ||| | || |||| ||||| || || | || Sbjct 17460344 TTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCACA 17460403 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 |||||| ||| || ||||| ||| | || || || |||| |||||| || ||||| || Sbjct 17460404 AGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATGG 17460463 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551 || ||||| || || ||||||||| | || || |||||||||||||| | || | Sbjct 17460464 GGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAATT 17460523 Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611 || ||||| ||||| ||| | |||||||| || || ||||||||||| |||||||| Sbjct 17460524 GCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTCCT 17460583 Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 183671 || ||||||||||| || || ||||||||||| || ||||| || |||||||| || Sbjct 17460584 GATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGAT 17460643 Query 183672 CTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATAT 183731 ||| ||||| | | ||| | || || || || || |||||||| ||||| || ||||| Sbjct 17460644 ATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 17460703 Query 183732 GATGGGAGTTGCTGGTATACTAGGAGG 183758 |||||||||||| || || |||| || Sbjct 17460704 GATGGGAGTTGCCGGAGTATTAGGCGG 17460730 >seq9 Length=29411429 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 182501 TGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCA 182560 ||| || || || || || ||||||||||| || || |||||||| ||||| || || Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 182561 CTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCAC 182620 ||||||| | ||||| |||||||| || || || |||||||| || | ||| | || Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 182621 GATGGCATTCAACCTCAA 182638 ||||| ||||| || || Sbjct 9641772 TATGGCTTTCAATCTTAA 9641755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611695908245600