Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq2 679 0.0 seq8 580 1e-160 seq4 307 1e-78 seq6 120 3e-22 seq5 102 9e-17 seq9 95.1 1e-14 >seq2 Length=21549876 Score = 679 bits (752), Expect = 0.0 Identities = 745/988 (75%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 164764 TTTTGCGAGTGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTT 164823 || ||| | ||| | ||| |||| | ||||||||||| |||| |||||||||||| | Sbjct 19773070 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19773129 Query 164824 ATGATCCCCTGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCC 164882 |||||||| || | |||| || | ||| ||||||| || ||||||||||| || Sbjct 19773130 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 19773188 Query 164883 CCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAA 164942 || || || ||||||||||||||||| ||||| | |||||| || | ||||| ||||| Sbjct 19773189 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 19773248 Query 164943 CATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTAT 165002 || ||||||||||| | |||| ||||| || |||||| | ||||| || || || Sbjct 19773249 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 19773308 Query 165003 TTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGT 165062 ||||||||||||| | | ||||| ||||| ||||| ||||||||||| || | |||| Sbjct 19773309 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 19773368 Query 165063 CTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 165122 | |||||| | | ||||||||||| || ||||||||||||||||||||| || ||| Sbjct 19773369 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 19773428 Query 165123 CCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGC 165182 || |||||||||||||||||| || |||||| || ||||| || |||||| | || Sbjct 19773429 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 19773488 Query 165183 AGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTAT 165242 |||||| || | || ||| | |||||||| ||||||||||||||||||||| | || || Sbjct 19773489 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 19773548 Query 165243 CTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCC 165302 ||||||||||| |||| |||| | || ||||| ||||| |||||||| ||||||||||| Sbjct 19773549 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCC 19773608 Query 165303 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 165362 || |||||| | || || ||||| |||||||| || || || ||| |||||||||||| Sbjct 19773609 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 19773668 Query 165363 AAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGG 165422 | || || || | | | || || ||||||| || | || | || Sbjct 19773669 TTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGGG 19773728 Query 165423 TTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGG 165482 ||| | ||||| ||||| |||||||| ||||| || || || || || || || || || Sbjct 19773729 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 19773788 Query 165483 TCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGC 165542 || | || |||||||| || || ||||| || || || | ||||||||| | | Sbjct 19773789 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGGT 19773848 Query 165543 AGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAA 165602 || ||||||||||| || || |||||||||||| | ||| |||| || ||||| ||||| Sbjct 19773849 TGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 19773908 Query 165603 CCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTAC 165662 || ||||| ||||| |||||||| ||| | |||||||| || | || |||| Sbjct 19773909 TCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTAC 19773968 Query 165663 TTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 165722 || |||||| | | ||||||||| ||| ||||||||||| ||||| || ||||| || Sbjct 19773969 TTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 19774028 Query 165723 TCACAACTTCCCCCTCGACCTCGCTGCT 165750 |||||||||||| || ||||| |||||| Sbjct 19774029 TCACAACTTCCCTCTAGACCTAGCTGCT 19774056 >seq8 Length=28014461 Score = 580 bits (642), Expect = 1e-160 Identities = 737/1008 (73%), Gaps = 6/1008 (1%) Strand=Plus/Minus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 ||||||||| | | | || ||||| |||||||| || |||||||| || | ||| || Sbjct 17889473 GACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 17889414 Query 166233 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGG 166292 || ||||||| | ||| | || |||||| | || ||||| ||||| || || |||| Sbjct 17889413 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 17889354 Query 166293 TATACTCATGGACTCGCAAGCAGTTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 166350 ||||| |||||| | || || ||| |||| ||| |||| ||||||| | || |||| Sbjct 17889353 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCAGCAG 17889296 Query 166351 TTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTC 166410 |||| || || || || | | | || ||| | | || || ||||| || || || | Sbjct 17889295 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 17889236 Query 166411 AAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACG 166470 |||||||||| | ||||| ||| | || || || ||| | |||||||||||||| | Sbjct 17889235 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 17889176 Query 166471 GTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGT 166529 | |||||||| ||||| ||||||||| | || || |||||| | ||||| ||| | | Sbjct 17889175 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 17889116 Query 166530 ATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTT 166589 | || || || |||||||| | || ||||| || || ||||| || ||| || || Sbjct 17889115 -TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTC 17889057 Query 166590 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCA 166649 || || || || ||||| ||||| ||||||| || || || ||| || || |||| Sbjct 17889056 CTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCG 17888997 Query 166650 ATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCAT 166709 || || |||||| |||| ||| | |||||||| || || ||||| |||||||||||||| Sbjct 17888996 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 17888937 Query 166710 ATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACA 166769 |||||||| || || || | | || | || |||| | || || ||||| | || Sbjct 17888936 ATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACC 17888877 Query 166770 GTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCT 166829 || || |||||||| | | | || ||||| |||||||| ||| || || || | Sbjct 17888876 GTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCA 17888817 Query 166830 ACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTC 166889 ||||||| |||||||| ||||| ||||| || || || |||| |||||| || ||||| Sbjct 17888816 ACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTT 17888757 Query 166890 GGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATG 166949 ||| |||| ||| ||||| | ||||| |||||||||||||| ||||| || || | Sbjct 17888756 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACC 17888697 Query 166950 GGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGAC 167009 ||| | |||| ||| | || || | | || || ||||| ||||| ||||| |||||| Sbjct 17888696 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATGAC 17888637 Query 167010 TTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAG 167069 || |||||||| ||| | | ||||| || |||||||| ||||| || ||||| ||||| Sbjct 17888636 TTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAA 17888577 Query 167070 AACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAG 167129 || ||||| || || |||||||| ||| | ||||||||| || ||||| |||||||| Sbjct 17888576 AATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAA 17888517 Query 167130 AGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 | | | |||||||||| |||||||| || | || |||||||| ||| Sbjct 17888516 AATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 17888469 >seq4 Length=20076173 Score = 307 bits (340), Expect = 1e-78 Identities = 406/557 (73%), Gaps = 6/557 (1%) Strand=Plus/Plus Query 166173 GACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTT 166232 ||||||||| | | | || ||||| |||||||| || |||||||| || | ||| || Sbjct 17460165 GACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 17460224 Query 166233 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGG 166292 || ||||||| | ||| | || |||||| | || ||||| ||||| || || |||| Sbjct 17460225 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 17460284 Query 166293 TATACTCATGGACTCGCAAGCAGTTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 166350 ||||| |||||| | || || ||| |||| ||| |||| ||||||| | || |||| Sbjct 17460285 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCAGCAG 17460342 Query 166351 TTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTC 166410 |||| || || || || | | | || ||| | | || || ||||| || || || | Sbjct 17460343 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 17460402 Query 166411 AAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACG 166470 |||||||||| | ||||| ||| | || || || ||| | |||||||||||||| | Sbjct 17460403 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 17460462 Query 166471 GTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTC-GTCTAGTAGGT 166529 | |||||||| ||||| ||||||||| | || || |||||| | |||| |||| || Sbjct 17460463 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCT-GTTCAA 17460521 Query 166530 ATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTT 166589 | || || || |||||||| | || ||||| || || ||||| || ||| || || Sbjct 17460522 TTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATTC 17460581 Query 166590 CTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCA 166649 || || || || ||||| ||||| ||||||| || || || ||| || || |||| Sbjct 17460582 CTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCG 17460641 Query 166650 ATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCAT 166709 || || |||||| |||| ||| | |||||||| || || ||||| |||||||||||||| Sbjct 17460642 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 17460701 Query 166710 ATGATGGGTGTAGCAGG 166726 |||||||| || || || Sbjct 17460702 ATGATGGGAGTTGCCGG 17460718 >seq6 Length=36134596 Score = 120 bits (132), Expect = 3e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 164873 TCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGT 164932 ||||||| | || | || |||||||||||| ||||| || ||||| || | | Sbjct 31663506 TCGCTGCCTCTCCAATAGATATTGATGGTATTTGTGAATCTTA-----GTTCTTTACTTT 31663560 Query 164933 ACGGTAA-CAACATCATCTCTGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCAC 164991 || || | | || ||||||||||| | ||||| |||||| | ||| || | ||| Sbjct 31663561 ACAAAAAACGATATTATCTCTGGTGCCATTGTTCCTACTTCTACGACGATCAGATTACAC 31663620 Query 164992 TTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTAC 165051 | || || ||||||||||||||| | | ||||| ||||| ||||| ||||||||||| Sbjct 31663621 CTTTACCCGATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTAT 31663680 Query 165052 CAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGA 165104 || | |||| | |||||| | | | ||||||||| || || ||| |||| Sbjct 31663681 GAGCTAATTGTTCTACACTTCTTACTTGATGTAGCTTGTTATATAGGTTGTGA 31663733 >seq5 Length=35065507 Score = 102 bits (112), Expect = 9e-17 Identities = 124/168 (74%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 165562 ATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTC 165621 || |||||||||||| | ||| |||| || ||||| ||||| || || || ||||| ||| Sbjct 15426036 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 15425977 Query 165622 AACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAAC 165681 ||||| ||| | |||||||| || | || |||||||||||| | | ||| Sbjct 15425976 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 15425918 Query 165682 CGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAAC 165729 ||||| ||| | ||||||||| || || || ||||| |||||| || Sbjct 15425917 CGTGCAAATCTTGCTATGGAAGTAATTCACGAACGTAATGCTCACCAC 15425870 >seq9 Length=29411429 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 165472 GGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCAC 165531 || || || || || | || |||||||| || || ||||| || ||||| | ||| Sbjct 9641891 GGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACAC 9641832 Query 165532 TTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACC 165591 |||||| | || || ||||||||||| || || |||||||||||| | ||| |||| || Sbjct 9641831 TTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACT 9641772 Query 165592 ATGGCATTCAACCTGAA 165608 ||||| ||||| || || Sbjct 9641771 ATGGCTTTCAATCTTAA 9641755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563660715450880