Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq2 589 2e-163 seq9 104 3e-17 seq5 104 3e-17 >seq2 Length=21549876 Score = 589 bits (652), Expect = 2e-163 Identities = 716/973 (74%), Gaps = 2/973 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||||||||| |||||||||||||| ||||| || | Sbjct 19774040 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTAGCACGGTTGATG 19773981 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||| | ||| | | ||| || ||||||||| || | | || ||||| || Sbjct 19773980 ATATCAGCCAAAGTAGTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTG 19773921 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 ||||| || ||||| || ||||| || |||| ||| | ||||| |||||||| || || Sbjct 19773920 AATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACT 19773861 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||| ||||||| ||||| | ||| ||| ||||| || |||||| ||| Sbjct 19773860 ACAGGCCAAGCAACCAAGAAGAAGTGTAAAGATCGAGAGTTGTTAAAACTAGCATATTGG 19773801 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || |||||||||||||| || || |||||| Sbjct 19773800 AAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGA 19773741 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || ||||||| | || || | ||||| || ||||| | || | | ||| Sbjct 19773740 CCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTAATCAAACTAGAG 19773681 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 19773680 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCT 19773621 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| |||||||||||||||||||| || |||||||| |||| ||| ||||| Sbjct 19773620 AACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAATCATAAAGTTG 19773561 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || || || | ||||| |||||||||||| ||||| || | ||| || Sbjct 19773560 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGGTAA 19773501 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 19773500 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 19773441 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | |||||||| ||||||||||| ||| | | |||||| Sbjct 19773440 CGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 19773381 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| |||||||| |||| ||| || || | | | Sbjct 19773380 AAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAGAT 19773321 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || ||||||||||| || || || || | || || || ||| | |||| | |||| Sbjct 19773320 GCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCA 19773261 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 ||||| || || ||||||||||| | | |||||||| || |||||||| ||||| ||| Sbjct 19773260 CCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCA 19773201 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| | | ||| || || || || ||||| ||| || | | || Sbjct 19773200 ATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA-AGTTGCGGTCAATAA 19773142 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | || ||||| || | || | |||||| | ||| || | Sbjct 19773141 GGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTAT 19773082 Query 84944 CCAATCACAGAAG 84956 ||| | |||||| Sbjct 19773081 CCAGTTGCAGAAG 19773069 >seq9 Length=29411429 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 84111 TTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACCACTGGC 84170 || ||||| || ||||| || |||| ||| | ||||| |||||||| || || || ||| Sbjct 9641755 TTAAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACAGGC 9641814 Query 84171 CAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATA 84230 |||||||||||||| ||||| | ||||||| ||||| || |||||| |||||||| Sbjct 9641815 CAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATT 9641874 Query 84231 AGACGACCGAAGTAGCC 84247 | || || || || || Sbjct 9641875 AATCGGCCAAAATAACC 9641891 >seq5 Length=35065507 Score = 104 bits (114), Expect = 3e-17 Identities = 122/164 (74%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 83994 TGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCC 84053 || || ||||||||||| || ||||||||| |||| ||||| || | | ||| ||| Sbjct 15425874 TGAGCATTACGTTCGTGAATTACTTCCATAGCAAGATTTGCACGGTTGATGATATCAGCC 15425933 Query 84054 CAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTC 84113 || ||||| | ||| || ||||||||| || | | || ||||| || || ||||| Sbjct 15425934 CAAGTATTAATAACGCGACCTTGGCTATCAACTACA-GATGGTTGAAATTGAACCCATTT 15425992 Query 84114 AGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAAT 84157 ||||| || ||||| || |||| ||| | ||||| |||||||| Sbjct 15425993 AGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCAAAT 15426036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571273514308960