Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6 116 3e-20 seq4 109 4e-18 seq5 107 2e-17 seq8 100 2e-15 >seq6 Length=36134596 Score = 116 bits (128), Expect = 3e-20 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 || ||||| || | ||| |||||||||| |||||| | || || ||| | | || Sbjct 33880668 AAGCAATTCTCTGCCGAAGAAATTTCATCCATGGTTCTTATCAAGATGCGTGAGATCGCT 33880727 Query 550370 AGTGCTTTTGTTGG-TCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 |||| | || |||| || | | |||| || | ||||| || ||||| || || Sbjct 33880728 GAAGCTTACCTAGGGTCAACT-GTGAAGAATGCTGTTGTCACTGTTCCTGCATACTTCAA 33880786 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 ||| || || | || || ||||||||||| || |||||| || ||||||||| | || Sbjct 33880787 TGATTCCCAGAGGCAGGCAACTAAAGATGCAGGTGTTATTGCGGGTCTTAATGTTATGCG 33880846 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||| |||||||| || || ||||||||| |||| ||||| ||||| || Sbjct 33880847 TATCATCAATGAGCCAACAGCTGCTGCAATTGCTTATGGTCTTGACAA 33880894 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| | || ||||| ||||| || |||||| Sbjct 725597 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCT 725538 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || || ||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 725537 GGTCGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTG 725478 Query 550520 GCATATGGA 550528 | |||||| Sbjct 725477 TCTTATGGA 725469 >seq4 Length=20076173 Score = 109 bits (120), Expect = 4e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | ||||| || ||||| || ||||||||||| | ||| | Sbjct 6747586 AAATTACCAAAGCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGACAGCAA 6747645 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | |||||||||||||||||||| ||| | | ||||| || ||||| ||||| || |||| Sbjct 6747646 CAAAAGATGCTGGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAGCCGACTG 6747705 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 |||| | ||||| ||||| |||| || Sbjct 6747706 CTGCATCCCTTGCTTATGGTTTTGAGAA 6747733 >seq5 Length=35065507 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| ||||||||||| | || ||||| || || || |||||| Sbjct 31532271 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 31532212 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 31532211 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 31532152 Query 550520 GCATATGGA 550528 | |||||| Sbjct 31532151 TCTTATGGA 31532143 Score = 96.9 bits (106), Expect = 3e-14 Identities = 159/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| || || ||||| || ||||| ||| | ||| || |||||||| || || Sbjct 30648867 CCTGAGGCGTAGGACAAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAATCCGCGAGG 30648924 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||| || ||||| || || ||||| || || | |||||| ||||| ||||| Sbjct 30648925 GTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGAATG 30648984 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTC 563429 || || || |||||||| || || || | ||||||||||||| | || | | || Sbjct 30648985 CCCTCCTTGTCTTGAATCTTGGCCTTCACATCATCAATTGTATCAGAG-GACTCAACCTC 30649043 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | || || ||||| || || || || || || ||||| Sbjct 30649044 GAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 30649088 >seq8 Length=28014461 Score = 100 bits (110), Expect = 2e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || || || ||||||||||| |||||||||||| | ||| | Sbjct 11483050 AAGTCACAAAGGCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCAA 11483109 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| | | ||||| || || || || || ||||||| Sbjct 11483110 CAAAAGATGCTGGCCGGATTGCTGGGTTGGAAGTTCTCCGCATCATAAACGAGCCTACTG 11483169 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 | || | | |||||||| |||| || Sbjct 11483170 CAGCATCTTTGGCATATGGGTTTGAAAA 11483197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295365385880