Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq2 560 3e-155 seq5 100 9e-17 seq9 91.5 4e-14 >seq2 Length=21549876 Score = 560 bits (620), Expect = 3e-155 Identities = 721/991 (73%), Gaps = 8/991 (1%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 19774056 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 19773997 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 || |||||||| | || ||| ||| |||| | || | | ||| |||| ||||| Sbjct 19773996 ATTAGCACGGTTGATGATATCAGCCAAAGTAGTAATAACGCGACCTTGGCTA---TCAAC 19773940 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || || ||||| ||||| ||||||||||| || || | || Sbjct 19773939 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 19773880 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | ||| || | || || ||||||| | ||| |||||| |||||| || || Sbjct 19773879 AGTGAACCAAATCCCTACTACAGGCCAAGCAACCAAGAAGAAGTGTAAAGATCGAGAGTT 19773820 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 |||||| |||||||| |||||||| | || ||||| || |||||||| || ||||| || Sbjct 19773819 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 19773760 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547 ||| || ||||||||||| || ||| | || || | || ||| |||| || Sbjct 19773759 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 19773700 Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607 ||| | ||| | ||| || || | |||||||||||| ||| | | || || Sbjct 19773699 TTCCCTAATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 19773640 Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667 |||||| ||||| ||||| | |||||| || |||||||||||||| || || |||||||| Sbjct 19773639 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 19773580 Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727 |||||| | ||||||||| ||||||||||| || || | ||||||||||||| |||||| Sbjct 19773579 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 19773520 Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAAT 5786 ||| || || | |||||| | || || || | ||||| | || ||||| || ||||||| Sbjct 19773519 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAG-CAGCTGCAACAGGAGCTGAAT 19773461 Query 5787 ATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCA 5846 |||| || |||||| || ||||| || | | | |||| |||||||| | || |||| Sbjct 19773460 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCA 19773401 Query 5847 AGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGT 5906 ||| || | ||||| | |||||| | || | || | || || || ||||||| Sbjct 19773400 TATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGT 19773341 Query 5907 AAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGT 5966 | | ||| ||||| | | || |||||||| || || || ||||| || || || || Sbjct 19773340 ATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCG 19773281 Query 5967 TGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGA 6026 || | || | || ||| || || || || |||||||| || |||| ||| || | | Sbjct 19773280 CAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAA 19773221 Query 6027 CGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATG 6086 | || ||||| || || || || || ||||| || ||||| | ||| || | |||||| Sbjct 19773220 CAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATA 19773161 Query 6087 CAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGC 6146 ||| ||||||||| || | | || ||||| || ||||| ||||| || | || || | Sbjct 19773160 CAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGAC 19773101 Query 6147 GGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||| | ||||||||| | ||||| ||||| Sbjct 19773100 GGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 19773070 >seq5 Length=35065507 Score = 100 bits (110), Expect = 9e-17 Identities = 110/144 (76%), Gaps = 7/144 (5%) Strand=Plus/Plus Query 5212 GTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATC 5271 || ||||||||| |||||||| |||||||||||| |||| || |||||||| | || ||| Sbjct 15425870 GTGGTGAGCATTACGTTCGTGAATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 15425929 Query 5272 TGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACTGACTGATTGAAGTTAAA 5328 |||||||| || | | ||| |||| ||||| || || || ||||| || || Sbjct 15425930 AGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAACTACAGA-TGGTTGAAATTGAA 15425985 Query 5329 GCCGTTAAGATTAAAAGCCATAGT 5352 || || ||||| ||||||||||| Sbjct 15425986 CCCATTTAGATTGAAAGCCATAGT 15426009 >seq9 Length=29411429 Score = 91.5 bits (100), Expect = 4e-14 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 5333 TTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGC 5392 |||||||| ||||||||||| || || | || || | ||| || | || || ||| Sbjct 9641755 TTAAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACAGGC 9641814 Query 5393 CAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATG 5452 |||| ||||| |||||| |||||| ||| |||||||| |||||||| |||||||| Sbjct 9641815 CAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATT 9641874 Query 5453 AGTCTCCCAAAGTAGCCA 5470 | || ||||| || ||| Sbjct 9641875 AATCGGCCAAAATAACCA 9641892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649578247432