Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq2 580 1e-160 seq5 104 3e-17 seq9 96.9 4e-15 >seq2 Length=21549876 Score = 580 bits (642), Expect = 1e-160 Identities = 702/953 (74%), Gaps = 12/953 (1%) Strand=Plus/Plus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||||||||| |||||||||||| ||| | | ||| | || || || | Sbjct 19773110 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTA 19773169 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| || || |||||||| ||||| |||||||| | || |||||| | |||| Sbjct 19773170 TCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 19773229 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | || || || ||||| || ||||||||||| | |||||| ||| || || | Sbjct 19773230 CTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCG 19773289 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 | | ||||| || || || |||||||| ||| || ||||||||||||| || ||||||| Sbjct 19773290 GATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTG 19773349 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTC 162835 | |||| | || | || | |||||| | | || | ||| | | | |||| Sbjct 19773350 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTC 19773406 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || |||||||||| || ||| | ||||||||||||||||| ||||||||| || | Sbjct 19773407 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 19773466 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 | || || | || || ||||| |||||| | || ||| | |||||||| ||||| Sbjct 19773467 CTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCT 19773526 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015 |||| | |||||| | || || ||||||||||| |||| ||| | || ||||| |||| Sbjct 19773527 CTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAG 19773586 Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075 |||| |||||||| ||||| || || || ||| | || || || ||||||||||| |||| Sbjct 19773587 AGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTT 19773646 Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135 | || || ||||||||||| ||||| | || || ||| | | || || ||||| |||| Sbjct 19773647 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTG 19773706 Query 163136 AGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTG 163195 | | || || || | ||||| | || || ||||| ||||||||||| || |||| Sbjct 19773707 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 19773766 Query 163196 TTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCAC 163255 | || |||||||| || ||||| || || |||||||| ||||| ||| |||||||| | Sbjct 19773767 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTC 19773826 Query 163256 GTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315 | || | ||||||||| | | ||| | ||||| || | || ||||||||||| | | Sbjct 19773827 GATCTTTACACTTCTTCTTGGTTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAG 19773886 Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-- 163373 || | |||||||| ||||| || ||||| ||||| ||||||||||| || ||||| Sbjct 19773887 GTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATA 19773946 Query 163374 -CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTA 163432 | |||| | || ||| |||||| ||| |||||| | ||| | || ||||||| Sbjct 19773947 GCCAAGGTCG---CGTTATTACTACTTTGGCTGATATCATCAACCGTGCTAATCTTGGTA 19774003 Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||||| |||||||| |||||||||||||||||||| || ||||| |||||| Sbjct 19774004 TGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 19774056 >seq5 Length=35065507 Score = 104 bits (114), Expect = 3e-17 Identities = 128/171 (75%), Gaps = 7/171 (4%) Strand=Plus/Minus Query 163297 ATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTC 163356 || ||||||||||| | ||| | |||||||| ||||| || || || ||||| ||| Sbjct 15426036 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 15425977 Query 163357 AACCAATCCGTCGTTGAC-GC--AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTT 163413 ||||| || || ||||| || |||| | || ||| ||||||||| |||||| | Sbjct 15425976 AACCA-TCTGTAGTTGATAGCCAAGGTCGC---GTTATTAATACTTGGGCTGATATCATC 15425921 Query 163414 AACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 163464 ||| | ||| |||| ||||||||| || ||||| |||||||||||| || Sbjct 15425920 AACCGTGCAAATCTTGCTATGGAAGTAATTCACGAACGTAATGCTCACCAC 15425870 >seq9 Length=29411429 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 163206 TGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCA 163265 ||| || ||||| || || |||||||| ||||| ||| |||||||| ||||| | || Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 163266 CTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAAC 163325 ||||||| | ||||| | ||||| || | || ||||||||||| | ||| | || Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 163326 TATGGCATTCAACCTTAA 163343 |||||| ||||| ||||| Sbjct 9641772 TATGGCTTTCAATCTTAA 9641755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553084717037280