Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9 212 1e-49 >seq9 Length=29411429 Score = 212 bits (234), Expect = 1e-49 Identities = 499/740 (67%), Gaps = 32/740 (4%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || ||||| || ||||| ||||| || ||| |||||| || | || | Sbjct 1286425 ACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGGT 1286484 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| || |||||| || ||||| |||||||| |||||||| ||||||| Sbjct 1286485 TCATGTCCGACGTGCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCG 1286544 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCG 25771 | || | ||||| ||| |||| | ||||||| | ||||||||| |||| || Sbjct 1286545 AGAACATCCACTCGGAGATGTACTC---GCTTCTGCTCGAGACGTACATCCGCGACGACG 1286601 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 ||||| || || || || | |||||||| | | ||| | | | ||||| Sbjct 1286602 TCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCG 1286661 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||||||| |||||| || || ||||||| || ||||||||| || ||| Sbjct 1286662 ACTGGGCCATGCGATGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGGCTCGTCGCC 1286717 Query 25891 TTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCA 25948 || || ||| || ||||| ||||| ||| ||||| || |||| ||||||||||||||| Sbjct 1286718 TTCGCCTGC-GTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCG-CCATCTTCTGGCTCA 1286775 Query 25949 AGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || || | |||| |||||| || || ||| ||||||||||||||| | | |||||| Sbjct 1286776 AGAAG-CGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAG 1286834 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 ||||||||| | || || |||||||| |||||| | || | | | | | || || Sbjct 1286835 GGTCTCCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGC-AAGCTCGA 1286890 Query 26068 CAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 | || || |||| | ||| || || || ||||| ||||||| |||||| Sbjct 1286891 CGAGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTG 1286950 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | || |||||| | ||||||||||| ||||| || Sbjct 1286951 CGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGA 1287010 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACG 26241 || || ||||||| ||||| || | ||| || || ||| | |||| || || Sbjct 1287011 GTTCGTCGCCGACCGGCTGCTCATGGC-GCTCGG--GTGCAAGAAGATGTACAACGT-CG 1287066 Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 || ||||||||||||| ||||| ||| || || | || |||||||||||||| || Sbjct 1287067 CC-AACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAG 1287125 Query 26302 AAGAGGGTCGGCGACTATCA 26321 ||| | ||||||||||| || Sbjct 1287126 AAGCGCGTCGGCGACTACCA 1287145 Score = 199 bits (220), Expect = 7e-46 Identities = 569/860 (66%), Gaps = 33/860 (4%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||| | ||||||||||| || |||||| || || ||| | || || Sbjct 8531269 ATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTC 8531210 Query 25537 GCCAAGGACATGGACGGCTGGTA---CGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| | ||| || ||| ||||||| || || || Sbjct 8531209 TCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCCCCCGACGAGCGCCACTTCATCTCC 8531150 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || ||||| || || || ||| |||||| || | || Sbjct 8531149 CACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGG 8531090 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| || |||||| || ||||| |||||||| |||||||| |||||| Sbjct 8531089 TTCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGATTCCAGATCGCCATC 8531030 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCC 25773 || || | ||||| ||| |||| | ||| || ||| ||||| |||| |||| Sbjct 8531029 GAGAACATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCC 8530970 Query 25774 GAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAG-CATCAAGAGGAAGGCGCG 25832 |||| || |||||||| | |||||||| ||| ||| | | | | ||||| Sbjct 8530969 GAGAAGGACCGGCTGTTCCGCGCCATCGA-CACCGTCCCGGCCGTGCGCCGCAAGGCCGA 8530911 Query 25833 GTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||||| |||||| || || |||||| || | |||||| || || |||| Sbjct 8530910 CTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCT 8530855 Query 25892 TTG-CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAA 25949 | | |||| || ||||| ||||| ||| || || || ||| ||||||||||||||||| Sbjct 8530854 TCGCCTGC-GTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGC-GCCATCTTCTGGCTCAA 8530797 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || |||| |||||| || || ||| ||||||||||||||| | | |||||||| Sbjct 8530796 GAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 8530737 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 || ||| | || || |||||||| |||||| | || | | | | ||| | || | Sbjct 8530736 CCTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGCAAGC--TC-GA 8530683 Query 26070 AGAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 ||| | |||| | ||| || || || || || ||||||| |||||| Sbjct 8530682 CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTG 8530623 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | ||||||||||| ||||| || Sbjct 8530622 CGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGA 8530563 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACG 26241 || || ||||||| || || || | ||| || || || ||| | |||| || || Sbjct 8530562 GTTCGTCGCCGACCGCCTCCTCATGGC-GCTCGG-CT-GCAAGAAGATGTACAACGT-CG 8530507 Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 || ||||| ||||||| ||||| |||||| || | || |||||||||||||| || Sbjct 8530506 CC-AACCCCTTCGACTGGATGGAGCTCATATCCCTGCAGGGCAAGACCAACTTCTTCGAG 8530448 Query 26302 AAGAGGGTCGGCGACTATCA 26321 ||| | ||||||||||| || Sbjct 8530447 AAGCGCGTCGGCGACTACCA 8530428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844660673280