Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq2 607 8e-169 seq8 529 2e-145 seq4 295 7e-75 seq6 98.7 1e-15 seq9 82.4 8e-11 >seq2 Length=21549876 Score = 607 bits (672), Expect = 8e-169 Identities = 705/948 (74%), Gaps = 2/948 (0%) Strand=Plus/Plus Query 8288 TCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATT 8346 |||| ||||| || ||| | |||||||| ||| || ||| |||| || | || ||| Sbjct 19773110 TCGGATGGTTCGGTGTTTTGATGATCCCTACC-TTATTGACCGCAACTTCTGTATTTATT 19773168 Query 8347 ACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGA 8406 | ||| ||| | ||||| ||||| || || || || || || || || || ||| |||| Sbjct 19773169 ATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGT 19773228 Query 8407 TCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATT 8466 ||| | | ||||| ||||| || ||||||||||| || |||| | ||| || || Sbjct 19773229 TCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATC 19773288 Query 8467 GGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGT 8526 || | ||||| ||||| || |||||||| || ||| ||||||||||| | ||||| ||| Sbjct 19773289 GGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGT 19773348 Query 8527 GGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGT 8586 |||||||| |||| | ||| | |||||| | ||||| || | ||||||||||||| Sbjct 19773349 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGT 19773408 Query 8587 GAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCT 8646 || |||||||| || ||| || || |||||||||||||| ||||||||| || ||| Sbjct 19773409 GAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 19773468 Query 8647 CCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCT 8706 |||||||| |||||| ||||||| ||| | | || ||| |||||||||| |||||| Sbjct 19773469 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT 19773528 Query 8707 GATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAG 8766 |||||||||||| | || || || ||||| ||||||| |||| |||| |||||||| ||| Sbjct 19773529 GATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 19773588 Query 8767 CACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCT 8826 || |||||||| ||||| || || |||||| | ||||| |||||||| |||||||| || Sbjct 19773589 CATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCC 19773648 Query 8827 CTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAA 8886 || || || ||||||||||| | || || ||| || || | || ||||| ||| Sbjct 19773649 CTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAA 19773708 Query 8887 ACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTT 8946 | ||| ||| || | || |||| || |||||||| || || ||||| || ||||| Sbjct 19773709 AACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTG 19773768 Query 8947 GCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGA 9006 ||||||||||| || ||||| || || |||||||||||||| ||||||||| ||| || Sbjct 19773769 GCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGA 19773828 Query 9007 AGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGC 9066 || || |||||| | | ||| |||||||| || || || ||||| || || | || Sbjct 19773829 TCTTTACACTTCTTCTTGGTTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGT 19773888 Query 9067 GTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGA 9126 | || ||||||||||| || || || ||||| |||||||| || | | || | Sbjct 19773889 ATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGC 19773948 Query 9127 CAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAA 9186 ||||| || || | | || | ||| || | | ||||| || || ||||||||| Sbjct 19773949 CAAGGTCGCGTTATTACTACTTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAA 19774008 Query 9187 GTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCT 9234 || ||||||||| | || || ||||||||||| || ||||| || ||| Sbjct 19774009 GTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 19774056 >seq8 Length=28014461 Score = 529 bits (586), Expect = 2e-145 Identities = 716/998 (72%), Gaps = 0/998 (0%) Strand=Plus/Minus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | || |||||| | | | || || ||||||||||| || |||||||| Sbjct 17889485 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 17889426 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | |||||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 17889425 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 17889366 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994 || || |||||| || || ||| | || ||| || | || ||| |||||| | Sbjct 17889365 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 17889306 Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054 || || || || || || ||||| || | | | || ||| | | ||||| ||||| Sbjct 17889305 ACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 17889246 Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114 || || | || || ||||| || ||| || | || || || ||| ||||||| Sbjct 17889245 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 17889186 Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174 || ||||| || || || || |||| || || |||||||| || ||||| || || | Sbjct 17889185 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 17889126 Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234 | || | | || ||||| ||||| || | || ||||| || || ||||||||||| Sbjct 17889125 TCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTT 17889066 Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294 || ||||| || |||||||| || || || |||||||||||||||||||||| ||| Sbjct 17889065 TCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGC 17889006 Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354 || || ||||| || || ||| | |||||| |||| || ||||||||||||||| | || Sbjct 17889005 GTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 17888946 Query 10355 CCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCAC 10414 || || ||||||||||||||||| || || | || | ||| || |||| || || || Sbjct 17888945 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 17888886 Query 10415 GGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCT 10474 || | || || |||||||| || | | | || || || ||||| || ||| ||| Sbjct 17888885 GGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCT 17888826 Query 10475 TTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCC 10534 ||| | ||||||| ||||| || ||||| ||||| || ||||| || || |||||| Sbjct 17888825 TTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGGTCC 17888766 Query 10535 CAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTA 10594 || || ||||| |||||||| ||||||||| ||| | |||||||||||||| |||||| Sbjct 17888765 CAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTA 17888706 Query 10595 CCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGT 10654 || || | ||| | |||| | ||||||| | | || || ||||| || || ||| Sbjct 17888705 CCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGT 17888646 Query 10655 GCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTC 10714 || || || || || || || || ||| | || | |||||||||||||||||||| ||| Sbjct 17888645 GCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTC 17888586 Query 10715 TATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAA 10774 || || || ||||| ||| | ||||| ||| ||||||| ||||||||| | || || Sbjct 17888585 TACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAG 17888526 Query 10775 CCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || |||| || | ||||| || || ||||| || Sbjct 17888525 CCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 17888488 >seq4 Length=20076173 Score = 295 bits (326), Expect = 7e-75 Identities = 405/566 (72%), Gaps = 0/566 (0%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | || |||||| | | | || || ||||||||||| || |||||||| Sbjct 17460153 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 17460212 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | |||||||| ||||||| | || | || || ||| |||| || || || ||| Sbjct 17460213 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 17460272 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTT 9994 || || |||||| || || ||| | || ||| || | || ||| |||||| | Sbjct 17460273 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 17460332 Query 9995 ACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 10054 || || || || || || ||||| || | | | || ||| | | ||||| ||||| Sbjct 17460333 ACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 17460392 Query 10055 CCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTG 10114 || || | || || ||||| || ||| || | || || || ||| ||||||| Sbjct 17460393 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 17460452 Query 10115 GCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGA 10174 || ||||| || || || || |||| || || |||||||| || ||||| || || | Sbjct 17460453 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 17460512 Query 10175 TTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTC 10234 | || | | || ||||| ||||| || | || ||||| || || ||||||||||| Sbjct 17460513 TCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTT 17460572 Query 10235 AGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGC 10294 || ||||| || |||||||| || || || |||||||||||||||||||||| ||| Sbjct 17460573 TCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGC 17460632 Query 10295 GTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAAT 10354 || || ||||| || || ||| | |||||| |||| || ||||||||||||||| | || Sbjct 17460633 GTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 17460692 Query 10355 CCCTTCCATATGATGGGAGTTGCTGG 10380 || || ||||||||||||||||| || Sbjct 17460693 CCATTTCATATGATGGGAGTTGCCGG 17460718 >seq6 Length=36134596 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 8422 AACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGGCCTCCACTTCTAC 8481 ||| | || ||||||||||| ||||||| | |||| | || | | ||| | ||| Sbjct 31663567 AACGATATTATCTCTGGTGCCATTGTTCCTACTTCTACGACGATCAGATTACACCTTTAC 31663626 Query 8482 CCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCTTACCAGCTT 8541 || || |||||||| || ||| ||||||||||| | ||||| ||||||||||| |||| Sbjct 31663627 CCGATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTA 31663686 Query 8542 GTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGA 8588 | ||| | |||||| | |||| || | |||||| ||| |||| Sbjct 31663687 ATTGTTCTACACTTCTTACTTGATGTAGCTTGTTATATAGGTTGTGA 31663733 >seq9 Length=29411429 Score = 82.4 bits (90), Expect = 8e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 8955 TGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCA 9014 ||| || ||||| || || |||||||||||||| ||||||||| ||| | || || Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 9015 TTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGTCTCGAC 9074 |||||| | ||||| |||||||| || || || ||||| || || | || | || Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 9075 CATGGCTTTCAACCTCAA 9092 ||||||||||| || || Sbjct 9641772 TATGGCTTTCAATCTTAA 9641755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516479922528000