Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6 134 9e-26 seq5 111 1e-18 seq7 104 2e-16 seq4 100 2e-15 seq8 95.1 8e-14 seq3 89.7 3e-12 >seq6 Length=36134596 Score = 134 bits (148), Expect = 9e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| ||||| || |||||||| || | || ||||||||||||| Sbjct 33880756 ATGCTGTTGTCACTGTTCCTGCATACTTCAATGATTCCCAGAGGCAGGCAACTAAAGATG 33880815 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| |||||||||||| | ||||| || ||||| |||||||| || ||| Sbjct 33880816 CAGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCAACAGCTGCTGCAA 33880875 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||||||||| ||||| Sbjct 33880876 TTGCTTATGGTCTTGACAAGAA 33880897 Score = 91.5 bits (100), Expect = 1e-12 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 474680 GTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739 ||||| |||| ||||| | || || || || |||||| || || | | || Sbjct 725654 GTTTTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGAAAATCTGTTTCCAAGGCT 725595 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || |||||||||||||| ||||| |||||| |||| ||||| || || || ||||| || Sbjct 725594 GTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCTGGT 725535 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 | || || || ||| |||| | | || || |||||||| || || || || || || Sbjct 725534 CGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTGTCT 725475 Query 474860 TATGG 474864 ||||| Sbjct 725474 TATGG 725470 >seq5 Length=35065507 Score = 111 bits (122), Expect = 1e-18 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| || || || | | ||| || |||||||| |||||||| || |||||||| Sbjct 30648910 TTGTAATCCGCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGC 30648969 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||| ||||| || ||||||||||||||||| || ||| | ||||| |||||| Sbjct 30648970 TGGTCAGGTGGAATGCCCTCCTTGTCTTGAATCTTGGCCTTCACATCATCAATTGTATCA 30649029 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || ||||| || || || || ||||| ||||| || || || || Sbjct 30649030 GAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTG 30649085 Score = 96.9 bits (106), Expect = 2e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 || || ||||| |||||||| |||||||||||| |||| ||||| ||||| || ||||| Sbjct 31532271 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 31532212 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 || | ||||| || ||| |||| | || || ||||||||||| || || || || Sbjct 31532211 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 31532152 Query 474857 GCTTATGG 474864 ||||||| Sbjct 31532151 TCTTATGG 31532144 >seq7 Length=28646061 Score = 104 bits (114), Expect = 2e-16 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||| ||||| ||||| || | ||| ||| | | || |||||||| || ||| Sbjct 24915885 ACGAAGGCGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATG--TTATAATCCGCGAGA 24915828 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | ||| ||||| ||||| ||||| || ||||| ||||| || || ||||| || Sbjct 24915827 GTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCCGGAGGGATG 24915768 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTC 480727 || |||||||| |||||||| || ||| ||||| ||||| | | | || | | Sbjct 24915767 CCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCC 24915708 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| | || || || || ||||| ||||||||||| || || Sbjct 24915707 AAGG-TGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTG 24915667 >seq4 Length=20076173 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796 ||||| |||||||||| ||||| || ||||| || || | |||||| |||||||| Sbjct 6747597 GCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGACAGCAACAAAAGATGCT 6747656 Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856 ||| | |||||||| | | ||| | || ||||| ||||| || || || || | ||| Sbjct 6747657 GGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAGCCGACTGCTGCATCCCTT 6747716 Query 474857 GCTTATGGTCTTGATAAGAA 474876 ||||||||| |||| ||||| Sbjct 6747717 GCTTATGGTTTTGAGAAGAA 6747736 Score = 93.3 bits (102), Expect = 3e-13 Identities = 208/308 (68%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 475877 GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATT-ATGAC 475935 || ||| |||| || |||||| | || | ||||| || || ||||| ||| | ||||| Sbjct 6750533 GTTCTTCTTGATGTTACTCCATTGTCTCTTGGTCTGGAGAC-GTTGGGTGGAGTGATGAC 6750591 Query 475936 TAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTA 475995 || ||||| |||||| || | | || | ||||||| | ||||| ||||| Sbjct 6750592 CAAGATTATTCCCAGAAACACAACACTGCCCACCTCAAAATCAGAGGTATTCTCCACAGC 6750651 Query 475996 TTCTGATAATCAAACAACTGTAACCATCCAAATCTT--TGAAGGTGAAAGAAAATTCACT 476053 | | ||| || |||| ||| || |||| || | | || || ||| | || Sbjct 6750652 TGCAGATGGACAGACAAGTGTTGAGAT--AAATGTTCTTCAGGGAGAGAGAGAGTTTGTC 6750709 Query 476054 AAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGA 476113 || || || ||||||| || | || || || |||||||| || | || Sbjct 6750710 CGGGACAACAAGTCTCTTGGAAGCTTCCGCTTGGATGGAATCCCTCCTGCACCACGTGGT 6750769 Query 476114 GTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||| ||||||||||| | |||||||||||||| ||||||||||| |||| ||||| Sbjct 6750770 GTTCCACAAATTGAAGTCAAGTTTGATATTGATGCCAATGGTATTCTCTCTGTTGCTGCT 6750829 Query 476174 TGTGATAA 476181 |||||| Sbjct 6750830 ATTGATAA 6750837 >seq8 Length=28014461 Score = 95.1 bits (104), Expect = 8e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || ||||| ||||| ||||| || || || | || || ||||| || || || Sbjct 22387123 AGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTA 22387064 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || ||||| |||||||| || ||||| || || || || ||||| || ||| Sbjct 22387063 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCC 22387004 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGT 480733 ||||| || |||||| || || ||||||||||||| | | || |||||||| Sbjct 22387003 TTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAA-CCTCAAGGGT 22386945 Query 480734 AATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || | ||||| || || ||||| Sbjct 22386944 GATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTG 22386909 Score = 87.8 bits (96), Expect = 1e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || ||||| || || ||| ||| || || ||||| || |||||||||||||| || Sbjct 22387312 TTGTAGTCAGCGAGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAAATAAGACGCTGC 22387253 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || ||||| || |||||||| || ||||| || || || || || || Sbjct 22387252 TGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCT 22387193 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | || ||||| ||||| || || || || || ||||| ||||| || || Sbjct 22387192 GATGACTCAA-CCTCAAGCGTAATGGTCTTGCCAGTAAGGGTCTTCACGAAGATCTG 22387137 >seq3 Length=24378308 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | |||||||| || || || ||||| || || | || || || || |||| Sbjct 24173326 ATGCCGTTGTCACTGTTCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATG 24173385 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| ||||| ||||| | || || || || || ||||| || ||||| Sbjct 24173386 CTGGAGTGATTGCTGGTCTCAATGTCATGCGCATCATCAACGAGCCAACTGCTGCCGCTA 24173445 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||||||||| ||||| Sbjct 24173446 TTGCCTATGGTCTTGACAAGAA 24173467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178685261776