Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq2 652 0.0 seq8 571 6e-158 seq4 342 6e-89 seq5 120 3e-22 seq9 89.7 6e-13 seq1 87.8 2e-12 seq7 86.0 7e-12 >seq2 Length=21549876 Score = 652 bits (722), Expect = 0.0 Identities = 739/988 (75%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || || |||||| | || |||||||| ||||| ||||| | || |||||||| || || Sbjct 19773070 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19773129 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || ||| | | || || | ||| || || || |||||| | | ||| || Sbjct 19773130 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 19773188 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 || || || || || || |||||||| || || ||||||| | | || |||||||| Sbjct 19773189 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 19773248 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 || ||||||||||| |||| ||| ||||| || ||||| ||||||| ||||| || Sbjct 19773249 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 19773308 Query 161115 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 161174 |||||||| ||| | | || || ||| | ||||| |||||||||| | || |||| Sbjct 19773309 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 19773368 Query 161175 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 161234 | |||||| | |||| | | ||| |||||||||||||||||||| || ||| Sbjct 19773369 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 19773428 Query 161235 TCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 161294 |||||| ||||||||||||||| || ||||| || |||||||| || || || | ||| Sbjct 19773429 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 19773488 Query 161295 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 161354 || ||| || | || ||| | |||||||| ||||||||||| |||||| | || || Sbjct 19773489 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 19773548 Query 161355 CTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCC 161414 |||||||| ||||||| ||| |||| ||||| |||||||| ||||| || ||||| || Sbjct 19773549 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCC 19773608 Query 161415 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 161474 || || ||| | || ||||| ||||| || |||||||| || |||||||| ||||| || Sbjct 19773609 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 19773668 Query 161475 TTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATGG 161534 ||| |||| |||||| || || | |||||||| |||||||| || || | || Sbjct 19773669 TTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGGG 19773728 Query 161535 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCGG 161594 ||||| || |||||||| |||||||| || || || || || || || || || || || Sbjct 19773729 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 19773788 Query 161595 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTGC 161654 || | || |||||||| ||| || |||||||| || || | ||||||||| | | Sbjct 19773789 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGGT 19773848 Query 161655 TGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 161714 |||||||||||| || || || ||||||||||| | || | || || ||||| ||||| Sbjct 19773849 TGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 19773908 Query 161715 CCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACAC 161774 || || || ||||| |||||||| ||| | |||||||| || ||| ||||| | || Sbjct 19773909 TCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTAC 19773968 Query 161775 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGC 161834 | ||| || | ||||||||||| |||||| |||||||| |||||||| || ||||| Sbjct 19773969 TTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 19774028 Query 161835 TCACAACTTCCCTCTTGACCTTGCTGCT 161862 ||||||||||||||| ||||| |||||| Sbjct 19774029 TCACAACTTCCCTCTAGACCTAGCTGCT 19774056 >seq8 Length=28014461 Score = 571 bits (632), Expect = 6e-158 Identities = 740/1016 (73%), Gaps = 6/1016 (1%) Strand=Plus/Minus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | ||||||||| | ||| |||||||| |||||||| || |||||||| Sbjct 17889485 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 17889426 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | |||||||| ||||||| | ||| | || |||||| |||| ||||| ||||| Sbjct 17889425 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 17889366 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGT-GCAAACTTTCT 162295 || || ||||||||| || ||| | |||||||||||| | || ||| |||| ||||| Sbjct 17889365 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCT 17889308 Query 162296 TA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGG 162354 || | || |||||||| || || || | | | | || ||| | |||| ||||||| Sbjct 17889307 TAACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 17889248 Query 162355 GTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTG 162414 | || || | |||||||| || | || ||||| ||| | || || || |||||||||| Sbjct 17889247 GCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTG 17889188 Query 162415 TGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC 162474 | || ||||| || || |||||||| |||||||||||| | || || |||||||| || | Sbjct 17889187 TTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTC 17889128 Query 162475 GA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTC 162533 | || || | | || ||||| ||||| ||| | ||||| || || || ||||| || Sbjct 17889127 GGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTT 17889069 Query 162534 GTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTC 162593 ||| || || || || ||||| |||| ||||| |||||||| || ||| || Sbjct 17889068 GTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTT 17889009 Query 162594 GGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTA 162653 || || ||||| || || |||||| | |||||| ||||||| || ||||| |||||| | Sbjct 17889008 GGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTG 17888949 Query 162654 AATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATT 162713 || || ||||| |||||||| || || || | | || | || |||| | |||||| Sbjct 17888948 AACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATT 17888889 Query 162714 CATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAA 162773 ||||| | || || ||||| || || | || || || || ||||| || || Sbjct 17888888 CATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGC 17888829 Query 162774 GCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGG 162833 || ||| || | || || | |||||||| ||||| ||||| || || || ||||| ||| Sbjct 17888828 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGG 17888769 Query 162834 TCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTT 162893 || || || || ||| |||||||| || || |||||||| |||||||||||||| ||| Sbjct 17888768 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 17888709 Query 162894 GTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTT 162953 || || |||| ||| | |||| ||| |||| || | | || || ||||| || || Sbjct 17888708 GTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTA 17888649 Query 162954 CGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACG 163013 ||||| || ||||| || || || ||| | ||||| || ||||| ||||| |||||||| Sbjct 17888648 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 17888589 Query 163014 TTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGAC 163073 ||||| || || || |||||| | || || || |||| || ||| | ||| | ||| Sbjct 17888588 TTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGAT 17888529 Query 163074 CAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 || |||||||| || || | |||||||| ||||| | ||| | || |||||||| Sbjct 17888528 CAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 17888473 >seq4 Length=20076173 Score = 342 bits (378), Expect = 6e-89 Identities = 421/569 (74%), Gaps = 6/569 (1%) Strand=Plus/Plus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | ||||||||| | ||| |||||||| |||||||| || |||||||| Sbjct 17460153 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 17460212 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | |||||||| ||||||| | ||| | || |||||| |||| ||||| ||||| Sbjct 17460213 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 17460272 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCT 162295 || || ||||||||| || ||| | |||||||||||| | | ||| ||||| ||||| Sbjct 17460273 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCT 17460330 Query 162296 T-ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGG 162354 | || || |||||||| || || || | | | | || ||| | |||| ||||||| Sbjct 17460331 TAACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 17460390 Query 162355 GTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTG 162414 | || || | |||||||| || | || ||||| ||| | || || || |||||||||| Sbjct 17460391 GCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTG 17460450 Query 162415 TGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCAC 162474 | || ||||| || || |||||||| |||||||||||| | || || |||||||| || | Sbjct 17460451 TTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTC 17460510 Query 162475 -GACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTC 162533 | || || | | || ||||| ||||| ||| | ||||| || || || ||||| || Sbjct 17460511 GGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTT 17460569 Query 162534 GTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTC 162593 ||| || || || || ||||| |||| ||||| |||||||| || ||| || Sbjct 17460570 GTTTCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTT 17460629 Query 162594 GGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTA 162653 || || ||||| || || |||||| | |||||| ||||||| || ||||| |||||| | Sbjct 17460630 GGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTG 17460689 Query 162654 AATCCTTTTCACATGATGGGCGTAGCAGG 162682 || || ||||| |||||||| || || || Sbjct 17460690 AACCCATTTCATATGATGGGAGTTGCCGG 17460718 >seq5 Length=35065507 Score = 120 bits (132), Expect = 3e-22 Identities = 128/168 (76%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 161674 ATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTC 161733 || ||||||||||| | || | || || ||||| ||||| || ||||| ||||| ||| Sbjct 15426036 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 15425977 Query 161734 AACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAAC 161793 ||||| ||| | |||||||| || ||| ||||| || || ||||| || | ||||| Sbjct 15425976 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 15425918 Query 161794 CGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAAC 161841 ||||| ||||| |||||||| || ||||| || ||||||||| || Sbjct 15425917 CGTGCAAATCTTGCTATGGAAGTAATTCACGAACGTAATGCTCACCAC 15425870 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| ||||||| ||| Sbjct 10084387 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACAGGTTCAAAT 10084328 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 10084327 CCTGTCATCCCTACCTAT 10084310 >seq9 Length=29411429 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 161584 GGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCAC 161643 || || || || || | || |||||||| ||| || |||||||| || || | ||| Sbjct 9641891 GGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACAC 9641832 Query 161644 TTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACC 161703 |||||| | |||||||||||||| || || || ||||||||||| | || | || || Sbjct 9641831 TTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACT 9641772 Query 161704 ATGGCATTCAACCTGAA 161720 ||||| ||||| || || Sbjct 9641771 ATGGCTTTCAATCTTAA 9641755 >seq1 Length=42845077 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| ||||||| ||| Sbjct 17558982 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACAGGTTCAAAT 17558923 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 17558922 CCTGTCATCCCTACCTAT 17558905 >seq7 Length=28646061 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||||| ||||| || |||||||| || ||||| || ||||||||||| || ||| Sbjct 13062543 TACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGC 13062602 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || || | || || || || ||||| ||| ||| ||||| |||||||| Sbjct 13062603 GCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCG 13062662 Query 158461 TTCCTGGACGATGACCA 158477 ||||| ||||| | ||| Sbjct 13062663 TTCCTCGACGACGCCCA 13062679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547747117837920