Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq8 578 5e-160 seq2 556 2e-153 seq4 327 1e-84 >seq8 Length=28014461 Score = 578 bits (640), Expect = 5e-160 Identities = 736/1013 (73%), Gaps = 0/1013 (0%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || |||||||| || ||||| Sbjct 17888473 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 17888532 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | ||||| ||| ||||| | ||| || || || || || || || |||||||| ||| Sbjct 17888533 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTC 17888592 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| || |||||||| ||||| ||| Sbjct 17888593 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 17888652 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| || || | | || || | ||| |||| | ||| | || || ||||| Sbjct 17888653 TTCAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCGGTACAAAT 17888712 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 |||||||||||||| ||||| | ||||| ||| |||| |||||||||||| ||||| Sbjct 17888713 AGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAA 17888772 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || || || || || ||||| |||||||| ||||| |||| || | | || || | Sbjct 17888773 AAGCGATTAGCGGTGACCATGGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCGCGG 17888832 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| |||||| || ||| | |||||||| ||||| || | || || || Sbjct 17888833 AAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCCCATGAATA 17888892 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | || | | || ||||| ||||||||||| |||||||| | | Sbjct 17888893 GCGCATAGCAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAAC 17888952 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | |||||| | ||||| |||||||||||| || ||||| Sbjct 17888953 GTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAAA 17889012 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| ||| || || || ||||| || || || || |||||| Sbjct 17889013 CTCGGCGCAAAGAACCAACCGGATTGCCCCAGTGGATAAATCAGGAATACGGAAACAAAA 17889072 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 |||||||| || |||||||| | ||| ||||| || || || | | || ||| ||| Sbjct 17889073 ACAGCGATTGGGCCAGAGAATGAAATTGCATTATAAGGCCGCAATTGAACAGACCGAGCA 17889132 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||||||||| || || ||||| || || |||||||| |||||| Sbjct 17889133 AGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCAACAAAA 17889192 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||| ||||| ||||| || ||||| Sbjct 17889193 GTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCCGGGCCCCAT 17889252 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 ||||| | | ||| || | | | | ||||| || || || || || || | |||| Sbjct 17889253 AGTAGCAACAAAGAGTGTGCTAAACTATTGGCAGGGGTGGAAACTGCTGCGGTTAAGAAA 17889312 Query 102550 TTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGTC 102609 || |||||| | || | ||| | || ||||||||||| ||||| |||| || Sbjct 17889313 TTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGGTATACCAAGAAGTTACAAAAGTT 17889372 Query 102610 GTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGAC 102669 || || |||| ||| || || | |||| ||||||| |||||||| | ||| |||||| Sbjct 17889373 GTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAAAGCAATAGGCCAGAC 17889432 Query 102670 CAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 || || ||||| ||||| || || | | | |||||| |||| || ||||| Sbjct 17889433 CATCCTACAAAAACAAAACGGTCCCTTCGTAACCAGTCGTCCATAATATCAAA 17889485 >seq2 Length=21549876 Score = 556 bits (616), Expect = 2e-153 Identities = 724/1007 (72%), Gaps = 3/1007 (0%) Strand=Plus/Minus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 19774056 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 19773997 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 | ||| ||||||| | || ||| | || | | || ||||| || | ||||| | Sbjct 19773996 ATTAGCACGGTTGATGATATCAGCCAAAGTAGTAATAACGCGACCTTGGCTATCAACTAC 19773937 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||||||||| || ||||| ||||| || |||| ||| | || || Sbjct 19773936 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 19773877 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 |||||| || || ||||| || | |||||||| Sbjct 19773876 GAACCAAATCCCTACTACAGGCCAAGCAACCAAGAAGAAGTGTAAAGATCGAGAGTTGTT 19773817 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 || || ||||||||||| || || || || |||||||||||||| || || || || Sbjct 19773816 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 19773757 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 |||||||||||||| || || ||||||| | || |||||| ||||||| || || Sbjct 19773756 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 19773697 Query 103531 ACGAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGAA 103590 | || || || || || | ||||| |||||||||||||| || ||||| ||||| Sbjct 19773696 CCTAATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 19773637 Query 103591 GACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAA 103650 || ||||| || || | |||||| || || ||||| || |||||||| || || ||||| Sbjct 19773636 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAA 19773577 Query 103651 GACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACC 103710 || | ||| ||||||| || || || || || ||||||||| |||| ||||| || Sbjct 19773576 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCC 19773517 Query 103711 TTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGC 103770 |||||||| ||||| | |||||| || || | ||||| ||||||||||| || ||||| Sbjct 19773516 TTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 19773457 Query 103771 GACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATATA 103830 ||| ||||| || ||||| ||||||||| | || |||||||||||| |||||||| Sbjct 19773456 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATA 19773397 Query 103831 TGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACAG 103890 | | |||| | |||||| | || | || | |||||||||| || || | Sbjct 19773396 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAA 19773337 Query 103891 CCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGGA 103950 ||||||||||| |||||| ||||||||||| || || ||||| | || || || || Sbjct 19773336 CCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGA 19773277 Query 103951 GGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGGG 104010 | |||| || ||||||||||| || ||||| ||||| | | ||||||| || || Sbjct 19773276 AGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGG 19773217 Query 104011 TTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAGA 104069 |||||||| || || ||||| || ||||| || || | ||| || | || || |||| Sbjct 19773216 CTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA 19773157 Query 104070 TGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGGT 104129 ||||| | ||| | || |||||||||| ||||||||||| || | || ||||||| Sbjct 19773156 -AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGT 19773098 Query 104130 TGTTTGTCGATGTAACCCACTCGCAGAAGTTATCCCACGAGGATTGT 104176 | | || || | ||| | ||||||| | ||||| ||| |||| Sbjct 19773097 TTTCGGTGCTAGTTATCCAGTTGCAGAAGCGACCCCAC-AGGCTTGT 19773052 >seq4 Length=20076173 Score = 327 bits (362), Expect = 1e-84 Identities = 412/566 (73%), Gaps = 0/566 (0%) Strand=Plus/Minus Query 102157 CCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAG 102216 || ||||| ||||||||||| |||||||| | |||||| ||||| || || || | |||| Sbjct 17460718 CCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAG 17460659 Query 102217 AGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGT 102276 || | ||||| |||||||||||| || ||||| |||||||||||||||| ||| || Sbjct 17460658 AGGATGAATCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCGGATTGC 17460599 Query 102277 CCGAGAGGATAGATGAGAAACACACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATA 102336 || || ||||| || || || || |||||||||||||| || |||||||| | ||| Sbjct 17460598 CCCAGTGGATAAATCAGGAATACGGAAACAAAAACAGCGATTGGGCCAGAGAATGAAATT 17460539 Query 102337 GCATTGTACGGACGAATTCCAATTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCA 102396 ||||| || || || | | || ||| ||| | || |||||||| | ||||||||| Sbjct 17460538 GCATTATAAGGCCGCAATTGAACAGACCGAGCAAGTTCAAATTGACGTAACATGAAACCT 17460479 Query 102397 ATGAGGGCAAATGCACCGTGGAGAGCCACAAAAGCCCAGAGTCCCCCAAGTTGGACCCAC 102456 || || ||||| || || |||||||| ||||||| ||| || || || | ||| ||| Sbjct 17460478 ATTAGTGCAAAAGCCCCATGGAGAGCAACAAAAGTCCACAGACCACCTAATTGACACCAA 17460419 Query 102457 CTGACGAAATCTCCTTGAGCTTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGAG 102516 | ||||| ||||| ||||| || ||||| ||||| | | ||| || | | | Sbjct 17460418 CGAGTAAAATCCCCTTGTGCTTCCGGGCCCCATAGTAGCAACAAAGAGTGTGCTAAACTA 17460359 Query 102517 TCAGCAGGCGTTGACACAGCAGCTGTAAGGAAATTAGCACCTTCAAGGTAACTAGACGCA 102576 | ||||| || || || || || || | |||||| |||||| | || | ||| Sbjct 17460358 TTGGCAGGGGTGGAAACTGCTGCGGTTAAGAAATTGCAACCTTCCAAATAGGAACTCGCC 17460299 Query 102577 AGCCCGTGGGTATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCG 102636 | || ||||||||||| ||||| |||| || || || |||| ||| || || | ||| Sbjct 17460298 AATCCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCG 17460239 Query 102637 AGATAAGCAGTGGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGT 102696 | ||||||| |||||||| | ||| |||||||| || ||||| ||||| || || | | Sbjct 17460238 AAATAAGCACAAGGAAAAAGCAATAGGCCAGACCATCCTACAAAAACAAAACGGTCCCTT 17460179 Query 102697 TTAATCCAGTCATCCAGGATGTCAAA 102722 | |||||| |||| || ||||| Sbjct 17460178 CGTAACCAGTCGTCCATAATATCAAA 17460153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633513504972960