Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5 122 4e-23 seq1 91.5 7e-14 >seq5 Length=35065507 Score = 122 bits (134), Expect = 4e-23 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || ||||| |||||||| || || | |||||| ||||||||||| || Sbjct 33030645 TACCTTTTCTCTTGCCTCCGCCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCA 33030586 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | ||| | || ||| ||||| | |||| | || || | || Sbjct 33030585 GCATGGGAACAATCCCATTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTC 33030526 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 |||||| |||| ||| | ||| ||||||||||| ||||| || | ||||| ||| Sbjct 33030525 TAATATTGTGAAT-TGAGAGACCAATTCCACCAGCACATTTGCTTATGGTAGCACATTCT 33030467 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| ||||||| | ||||||||| ||||||| Sbjct 33030466 GAGAGAGTATCATAAATTCCCTCAATGCTATCATCTTTCAT 33030426 >seq1 Length=42845077 Score = 91.5 bits (100), Expect = 7e-14 Identities = 159/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 26060 AAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACT 26119 || ||||| ||||| || |||||||||||||| || || | ||||| ||||||||||| Sbjct 6095941 AACCTACCCTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACA 6095882 Query 26120 TTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTC 26179 | ||| ||||| | ||| | || ||| ||||| | | | || | | || || Sbjct 6095881 CGTAGCATAGGAACAATCCCATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTA 6095822 Query 26180 GATCTAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA 26238 | || ||||| |||| | ||| | ||| ||||| ||||| |||| || | ||||| Sbjct 6095821 GCTCGAATATTGTGAAC-TGATACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACA 6095763 Query 26239 ATC--TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||| ||||| | ||||| | ||||| ||| ||||||| Sbjct 6095762 TTCCTTCAAA--GTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 6095718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039962992900