Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2 477 1e-129 seq8 376 3e-99 seq4 241 1e-58 seq6 100 3e-16 seq9 86.0 7e-12 seq1 86.0 7e-12 >seq2 Length=21549876 Score = 477 bits (528), Expect = 1e-129 Identities = 702/986 (71%), Gaps = 6/986 (1%) Strand=Plus/Minus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | || Sbjct 19774052 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 19773993 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGC-ATCAACAACTGA 124167 || | ||| | | |||| || | || | | | || || || |||||| || || Sbjct 19773992 GCACGGTTGATGATATCAGCCAAAGTAGTAATAACGCGACC-TTGGCTATCAACTACAGA 19773934 Query 124168 TTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAA 124227 |||||| || ||||| || || | ||||| ||||| || | ||||| | || || || Sbjct 19773933 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 19773874 Query 124228 CCATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAA 124287 ||| | | ||| ||||| || | | | ||||||||| | | || |||||||| || Sbjct 19773873 CCAAATCCCTACTACAGGCCAAGCAACCAAGAAGAAGTGTAAAGATCGAGAGTTGTTAAA 19773814 Query 124288 TGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGT 124347 |||||| |||||||| | || ||||| ||||| || || || || || || || || Sbjct 19773813 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 19773754 Query 124348 TTCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCT 124407 ||||| ||||| || || | ||||| | || || || | || || ||||| || Sbjct 19773753 CTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCT 19773694 Query 124408 GATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACAT 124467 || | | ||| || || | ||||||||||| || ||||| || || ||||| | Sbjct 19773693 AATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 19773634 Query 124468 TCCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAAC 124527 || ||||| ||| |||||| || |||||||| || |||||||||||||| ||||| || Sbjct 19773633 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATAC 19773574 Query 124528 GAACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTG 124587 | |||||||||||||||||| || || || | ||||||||||||||||| || || Sbjct 19773573 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 19773514 Query 124588 ACCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAAC 124647 ||||| ||||| | ||||| ||||| ||||| | || || |||||||| ||||| Sbjct 19773513 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 19773454 Query 124648 ACAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGC 124707 | |||||||||||||| || | | | | |||||||||| | ||||| || Sbjct 19773453 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 19773394 Query 124708 TGAAATACCAATAAGGAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCA 124767 | | ||||| | |||||| | || | | || ||||||||||||||| || ||||| Sbjct 19773393 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCA 19773334 Query 124768 TTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGA 124827 |||||||||| ||| |||||||| |||||||| ||||| | |||||| || || | Sbjct 19773333 CTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGT 19773274 Query 124828 TGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTC 124887 |||| || ||||||||||| || ||||| || || | |||||||| | || || || Sbjct 19773273 AGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTC 19773214 Query 124888 TCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGCTG 124946 | || || || ||||| || ||||| || || || || || | || || ||| | | Sbjct 19773213 ACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAAG 19773155 Query 124947 CTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTTGT 125006 ||| || | |||| || ||||| | |||||| ||||| || | |||| | ||| | Sbjct 19773154 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTT-T 19773096 Query 125007 TTGTTGAT-GTTACCCACTCACAGAA 125031 | | || | |||| ||| | ||||| Sbjct 19773095 TCGGTGCTAGTTATCCAGTTGCAGAA 19773070 >seq8 Length=28014461 Score = 376 bits (416), Expect = 3e-99 Identities = 708/1043 (68%), Gaps = 31/1043 (3%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || ||| ||||| || || Sbjct 17888469 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTG 17888528 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || |||||| || | || || || || | |||||| || || || ||||| Sbjct 17888529 ATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAA 17888588 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | || || || || || ||||| || || | Sbjct 17888589 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACG 17888648 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| || || || || || | || |||| |||| | ||| |||| || || Sbjct 17888649 TAGGTTCAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCGGTAC 17888708 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || | ||||| ||| ||||| | | ||| || ||||| || | |||||| || || || Sbjct 17888709 AAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGA 17888768 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | || || || | ||| |||||||||||| | || || || | || || Sbjct 17888769 CCAAAAGCGATTAGCGGTGACCATGGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 17888828 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || | | ||| ||| ||| ||| | | || Sbjct 17888829 GCGGAAGGTATTTGC---------ACCATCACC------------GTCCTCAAATAGAGT 17888867 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | ||| ||||| |||||||| || ||||| | || | |||| || ||| ||||| Sbjct 17888868 GTTTTCCACGGTTGCCCCATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGCAAC 17888927 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| ||||| || || || || ||||| | ||| | ||| | Sbjct 17888928 TCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAA 17888987 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| || || || || || |||||||||| | || || ||||| Sbjct 17888988 TCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCGGATTGCCCCAGTGG 17889047 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| ||||| || | | | || || ||||| ||||||||| | ||| || || Sbjct 17889048 ATAAATCAGGAATACGGAAACAAAAACAGCGATTGGGCCAGAGAATGAAATTGCATTATA 17889107 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||| | | ||| | || | |||||||| | | |||||||||||| ||| | Sbjct 17889108 AGGCCGCAATTGAACAGACCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGC 17889167 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 ||| | ||||| | || ||||| |||| ||||| || | ||| |||||||| || Sbjct 17889168 AAAAGCCCCATGGAGAGCAACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAA 17889227 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GACTATG---ACCCATTGCGTCA 123700 ||||||||||| || ||||| || | || | || | || | | |||| Sbjct 17889228 ATCCCCTTGTGCTTCCGGGCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGG---- 17889283 Query 123701 CCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATA 123760 |||| ||||| |||||||| |||||||| || || || | ||| ||| || | Sbjct 17889284 -CAGGGGTGGAAACTGCTGCGGTTAAGAAATTGCAACCTTCCAAATAGGAACTCGCCAAT 17889342 Query 123761 CCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGA 123820 ||||| |||||||| || || || || || || ||| |||||||| || | | | | Sbjct 17889343 CCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAA 17889402 Query 123821 TACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTT 123880 || |||||||| | ||| || || ||||||||||||| || |||||||| || || | Sbjct 17889403 TAAGCACAAGGAAAAAGCAATAGGCCAGACCATCCTACAAAAACAAAACGGTCCCTTCGT 17889462 Query 123881 AACCAGTCGTCAAGAACATCAAA 123903 ||||||||||| | || |||||| Sbjct 17889463 AACCAGTCGTCCATAATATCAAA 17889485 >seq4 Length=20076173 Score = 241 bits (266), Expect = 1e-58 Identities = 404/583 (69%), Gaps = 10/583 (2%) Strand=Plus/Minus Query 123326 CCACCTAGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAA 123385 || |||| || ||| ||||| |||||||| |||||||| ||||| || || || || Sbjct 17460730 CCGCCTAATACTCCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAAT 17460671 Query 123386 CCTTGTATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAAC 123445 ||||| | ||| | ||| | ||||| || ||||| || || || || || |||||| Sbjct 17460670 CCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAAC 17460611 Query 123446 CAACTGTGCTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCA 123505 |||| | || || |||||||| ||||| || | | | || || ||||| || Sbjct 17460610 CAACCGGATTGCCCCAGTGGATAAATCAGGAATACGGAAACAAAAACAGCGATTGGGCCA 17460551 Query 123506 GAGAATGCGAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTG 123565 ||||||| | ||| || ||||| | | ||| | || | |||||||| | Sbjct 17460550 GAGAATGAAATTGCATTATAAGGCCGCAATTGAACAGACCGAGCAAGTTCAAATTGACGT 17460491 Query 123566 AGCATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCG 123625 | |||||||||||| ||| |||| | ||||| | || ||||| |||| ||||| || Sbjct 17460490 AACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCAACAAAAGTCCACAGACCACCT 17460431 Query 123626 AGTTGTAACCAACGAACGAATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGA--GAC 123683 | ||| |||||||| || ||||||||||| || ||||| || | || | || Sbjct 17460430 AATTGACACCAACGAGTAAAATCCCCTTGTGCTTCCGGGCCCCATAGTAGCAACAAAGAG 17460371 Query 123684 TATG---ACCCATTGCGTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCT 123740 | || | | |||| |||| ||||| |||||||| |||||||| || || | Sbjct 17460370 TGTGCTAAACTATTGG-----CAGGGGTGGAAACTGCTGCGGTTAAGAAATTGCAACCTT 17460316 Query 123741 CAAGATATGAAGATGCAATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGA 123800 | | ||| ||| || | ||||| |||||||| || || || || || || ||| | Sbjct 17460315 CCAAATAGGAACTCGCCAATCCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAA 17460256 Query 123801 ACCAACCACCGATTGATAGATACGCACAAGGCAGAAGTAAAAGACCAGACCATCCTATGA 123860 ||||||| || | | | ||| |||||||| | ||| || || ||||||||||||| | Sbjct 17460255 ACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAAAGCAATAGGCCAGACCATCCTACAA 17460196 Query 123861 ATACAAAACGATCTCTCTTTAACCAGTCGTCAAGAACATCAAA 123903 | |||||||| || || |||||||||||| | || |||||| Sbjct 17460195 AAACAAAACGGTCCCTTCGTAACCAGTCGTCCATAATATCAAA 17460153 >seq6 Length=36134596 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 124723 GAAGTGGAAAATTACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGC 124782 |||||| | || | | || ||||||||||||||| || ||||| |||||||||| ||| Sbjct 31663701 GAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAACCACTCATCAACAGATGC 31663642 Query 124783 TGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACC 124842 |||||||| || ||||| | ||||| || ||| | | || | ||||||| ||||| Sbjct 31663641 AGCTTCCCAAATCGGGTAAAGGTGTAATCTGATCGTCGTAGAAGTAGGAACAATGGCACC 31663582 Query 124843 AGAGATGATGTTGTT 124857 |||||| || | ||| Sbjct 31663581 AGAGATAATATCGTT 31663567 >seq9 Length=29411429 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | |||||||| || || ||||||||||| ||||||||||| || Sbjct 23362045 ACACCAATAGGACCCATTCCAGGACCACCCCCACCATGTGGAATGCAGAATGTCTTGTGA 23362104 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | || || || || |||||||| ||| Sbjct 23362105 AGGTTAAGGTGGCAAACATCTGCTCCA 23362131 >seq1 Length=42845077 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | |||||||| || || ||||||||||| ||||||||||| || Sbjct 28219063 ACACCAATAGGACCCATTCCAGGACCACCCCCACCATGTGGAATGCAGAATGTCTTGTGA 28219004 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | || || || || |||||||| ||| Sbjct 28219003 AGGTTAAGGTGGCAAACATCTGCTCCA 28218977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998313150240