Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2 558 5e-154 seq8 538 5e-148 seq4 361 7e-95 seq9 105 9e-18 seq5 86.0 8e-12 >seq2 Length=21549876 Score = 558 bits (618), Expect = 5e-154 Identities = 702/961 (73%), Gaps = 2/961 (0%) Strand=Plus/Minus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| || || | || || || || || || | |||||| || || || | ||||| Sbjct 19774056 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 19773997 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 | ||||||||||| | || ||| |||| | | || ||||| || ||||| || Sbjct 19773996 ATTAGCACGGTTGATGATATCAGCCAAAGTAGTAATAACGCGACCTTGGCTATCAACTAC 19773937 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||| ||||| ||||| |||||||||||||| || | ||| | || || Sbjct 19773936 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 19773877 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 |||||| || || || || ||||| ||| | | ||||||||| || || || |||||||| Sbjct 19773876 GAACCAAATCCCTACTACAGGCCAAGCAACCAAGAAGAAGTGTAAAGATCGAGAGTTGTT 19773817 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 || ||||||||||||||| || || || || || ||||| || || || || || || Sbjct 19773816 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 19773757 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089 |||||||| |||||||| || | ||||| | || || || ||||||| || || Sbjct 19773756 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 19773697 Query 27090 ACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149 | | | ||| || |||| || ||||||||| ||| || || || ||||| Sbjct 19773696 CCTAATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 19773637 Query 27150 TACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAA 27209 ||| ||||| ||||| | |||||| || || ||||||||||| || || ||||||||||| Sbjct 19773636 TACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAA 19773577 Query 27210 TACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACC 27269 ||||| ||| |||| ||||||||||| || || | ||||||| |||| |||||| || Sbjct 19773576 TACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCC 19773517 Query 27270 TTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGC 27329 |||||| | ||| || | | ||| || ||| | ||||| || || ||||| |||||||| Sbjct 19773516 TTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 19773457 Query 27330 TACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATA 27389 ||| ||||| ||||||||||| | ||| | |||||||||||||| |||||||| Sbjct 19773456 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATA 19773397 Query 27390 AGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAA 27449 | | | || | | |||||| | || | || | |||||||||| || || || Sbjct 19773396 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTGTATAA 19773337 Query 27450 CCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGA 27509 ||||||||| | ||||| |||||||| |||||||| ||||| | ||||| || || Sbjct 19773336 CCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGA 19773277 Query 27510 ACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGG 27569 | | || | || |||||||| || || ||||| || || | | ||||||| ||| || Sbjct 19773276 AGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGG 19773217 Query 27570 TTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGA 27628 ||||||||||| |||||||| || || || || |||||||| |||| ||| || |||| Sbjct 19773216 CTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA 19773157 Query 27629 CAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGT 27688 |||||| | || | || |||||||||| ||||||||||| || | || | ||||| Sbjct 19773156 -AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGT 19773098 Query 27689 T 27689 | Sbjct 19773097 T 19773097 >seq8 Length=28014461 Score = 538 bits (596), Expect = 5e-148 Identities = 737/1023 (72%), Gaps = 10/1023 (1%) Strand=Plus/Plus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCA---ATTACAGGAAAGTTTTCGTGTG 23442 || ||||||| || || | ||| || | |||||| | || | || ||||| || | Sbjct 17888468 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGA---TTTTCATGAG 17888524 Query 23443 GTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGT 23502 | || || || |||||| |||| | || | ||| || | ||||||||| |||| Sbjct 17888525 GCTGATCCTGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGT 17888584 Query 23503 AGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAG 23562 |||| |||||| | | |||||| || ||||| || || || || || ||||| | Sbjct 17888585 AGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGG 17888644 Query 23563 CACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAG 23622 |||| || || ||||| || || | | |||||||| | | ||| | ||| |||| | Sbjct 17888645 CACGTAGGTTCAGAGCCAGGCCGACTACGCCAATAGCACTCATCCATAAACCGGTGACCG 17888704 Query 23623 GAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTT 23682 | ||||| | ||||||||| || |||||||| |||||| ||| ||||| || ||||||| Sbjct 17888705 GTACAAATAGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTT 17888764 Query 23683 GTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGA 23742 | |||||||| ||||| || || ||||| ||||| || || || | ||||| | | | Sbjct 17888765 GGGACCAAAAGCGATTAGCGGTGACCATGGAATAAGTTTCTTCAGCTTGAGTTGGGTTAA 17888824 Query 23743 ACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTC 23802 | || || || ||||| || || || ||| | || || || || || || | | Sbjct 17888825 AAGCGCGGAAGGTATTTGCACCATCACCGTCCTCAAATAGAGTGTTTTCCACGGTTGCCC 17888884 Query 23803 CATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGG 23862 |||||||||| | || || || | || | || || ||||||||||||||||| || | Sbjct 17888885 CATGAATAGCGCATAGCAGAGCCGCGCCTAATACTCCGGCAACTCCCATCATATGAAATG 17888944 Query 23863 GGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAA 23922 |||| | |||||| |||||||| || |||| |||||| | ||| | || ||||| || | Sbjct 17888945 GGTTCAACGTCCAATTATGAAATCCTTGGAAGAAGAGGATGAATCGAAATATCGCTGCTA 17889004 Query 23923 CACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAG 23982 | || ||||||||||||||||||||| || || |||| ||||| || |||||||| | Sbjct 17889005 CGCCAAAACTCGGCGCAAAGAACCAACCGGATTGCCCCAGTGGATAAATCAGGAATACGG 17889064 Query 23983 ACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTA 24042 | || || ||||| || || ||||| || | ||| ||||| || || || | | || | Sbjct 17889065 AAACAAAAACAGCGATTGGGCCAGAGAATGAAATTGCATTATAAGGCCGCAATTGAA-CA 17889123 Query 24043 GA-CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGA 24101 || || || |||||||| ||||||||||| |||||||| |||||||| || || |||||| Sbjct 17889124 GACCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGA 17889183 Query 24102 GCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCA 24161 |||||||| | ||| || || || | ||| ||| || ||| |||||||| | || Sbjct 17889184 GCAACAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCC 17889243 Query 24162 GGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCC 24221 || ||||| ||||| | | ||| || | | | | ||||| || || || ||||| Sbjct 17889244 GGGCCCCATAGTAGCAACAAAGAGTGTGCTAAACTATTGGCAGGGGTGGAAACTGCTGCG 17889303 Query 24222 G-TAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGT 24280 | ||||||| || ||| || | ||||||||| || | ||||||||| |||||| || Sbjct 17889304 GTTAAGAAA-TTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGGTATACCAAGAAGT 17889362 Query 24281 AACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAG 24340 ||||||| ||| || |||| |||||| || | || | ||||||| |||| ||| | Sbjct 17889363 TACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAAGGAAAAAGCAA 17889422 Query 24341 GAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTC 24400 || |||||||| || ||||| ||||| || |||| | | ||||||||||| || || Sbjct 17889423 TAGGCCAGACCATCCTACAAAAACAAAACGGTCCCTTCGTAACCAGTCGTCCATAATATC 17889482 Query 24401 AAA 24403 ||| Sbjct 17889483 AAA 17889485 >seq4 Length=20076173 Score = 361 bits (400), Expect = 7e-95 Identities = 424/568 (75%), Gaps = 4/568 (1%) Strand=Plus/Minus Query 23838 CCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAG 23897 || ||||||||||||||||| || ||||| | |||||| |||||||| || |||| |||| Sbjct 17460718 CCGGCAACTCCCATCATATGAAATGGGTTCAACGTCCAATTATGAAATCCTTGGAAGAAG 17460659 Query 23898 AGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGT 23957 || | ||| | || ||||| || || || ||||||||||||||||||||| || || Sbjct 17460658 AGGATGAATCGAAATATCGCTGCTACGCCAAAACTCGGCGCAAAGAACCAACCGGATTGC 17460599 Query 23958 CCCAAAGGATAGATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATC 24017 |||| ||||| || |||||||| || || || ||||| || || ||||| || | ||| Sbjct 17460598 CCCAGTGGATAAATCAGGAATACGGAAACAAAAACAGCGATTGGGCCAGAGAATGAAATT 17460539 Query 24018 GCATTGTAGGGACGGATTCCAATTAGAC-GTGCCAGTTCAAACTGACGTAACATAAAACC 24076 ||||| || || || | | || |||| | || |||||||| ||||||||||| ||||| Sbjct 17460538 GCATTATAAGGCCGCAATTGAAC-AGACCGAGCAAGTTCAAATTGACGTAACATGAAACC 17460480 Query 24077 TATAAGTGCAAAGGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCA 24136 ||| |||||||| || || |||||||||||||| | ||| || || || | ||| ||| Sbjct 17460479 TATTAGTGCAAAAGCCCCATGGAGAGCAACAAAAGTCCACAGACCACCTAATTGACACCA 17460420 Query 24137 CCGTTGAAAGTCCCCTTGAGACTCAGGACCCCAAAGTAGAAGAAGAGAATGACCCATAGC 24196 || ||| |||||||| | || || ||||| ||||| | | ||| || | | | Sbjct 17460419 ACGAGTAAAATCCCCTTGTGCTTCCGGGCCCCATAGTAGCAACAAAGAGTGTGCTAAACT 17460360 Query 24197 GTCAGCAGGCGTCGAGACAGCTGCCGT-AAGAAAGTTAGCACCCTCAAGATAGGAACTAG 24255 | ||||| || || || ||||| || |||||| || ||| || | ||||||||| | Sbjct 17460359 ATTGGCAGGGGTGGAAACTGCTGCGGTTAAGAAA-TTGCAACCTTCCAAATAGGAACTCG 17460301 Query 24256 CAAGTCCATGGGTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGG 24315 | | ||||||||| |||||| || ||||||| ||| || |||| |||||| || | | Sbjct 17460300 CCAATCCATGGGTATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAG 17460241 Query 24316 CAAGATAAGCAGTGGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCC 24375 | | ||||||| |||| ||| | || |||||||| || ||||| ||||| || |||| Sbjct 17460240 CGAAATAAGCACAAGGAAAAAGCAATAGGCCAGACCATCCTACAAAAACAAAACGGTCCC 17460181 Query 24376 GTTTAACCCAGTCGTCCAAGATGTCAAA 24403 | | ||||||||||| || ||||| Sbjct 17460180 TTCGTAACCAGTCGTCCATAATATCAAA 17460153 >seq9 Length=29411429 Score = 105 bits (116), Expect = 9e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 26872 TTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACAACGGGC 26931 || |||||||||||||| || | ||| | || |||||||| || || || || ||| Sbjct 9641755 TTAAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACTACAGGC 9641814 Query 26932 CATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATC 26991 || ||||| | ||||||||| || ||||| |||||||| || ||||||||||||||| Sbjct 9641815 CAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGGAAGATT 9641874 Query 26992 AAACGACCGAAGTAGCCA 27009 || || || || || ||| Sbjct 9641875 AATCGGCCAAAATAACCA 9641892 >seq5 Length=35065507 Score = 86.0 bits (94), Expect = 8e-12 Identities = 118/164 (72%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 26755 TGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGAACGTCTGCC 26814 || || || | ||||||||| || || | ||||| |||||||||| | || ||| Sbjct 15425874 TGAGCATTACGTTCGTGAATTACTTCCATAGCAAGATTTGCACGGTTGATGATATCAGCC 15425933 Query 26815 CAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTGAAACCGTTG 26874 ||||| || | || ||||| || ||||| ||||| || ||||| ||||| || || Sbjct 15425934 CAAGTATTAATAACGCGACCTTGGCTATCAACTACAGA-TGGTTGAAATTGAACCCATTT 15425992 Query 26875 AGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGAT 26918 |||||||||||||| || | ||| | || |||||||| || Sbjct 15425993 AGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCAAAT 15426036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665494300175840