Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq9 127 2e-24 >seq9 Length=29411429 Score = 127 bits (140), Expect = 2e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 |||||||||||| || | || || || || || ||||| ||||||||||| || ||||| Sbjct 1286696 CTTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATT 1286755 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 1286756 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGA 1286815 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || |||||||||||| Sbjct 1286816 GCTCATCTCCCGCGACGAGGGTCTCCAC 1286843 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || || || Sbjct 8530877 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTT 8530818 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | ||||||||||| |||||||| ||||| |||||| || || Sbjct 8530817 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 8530758 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || ||||| || ||| Sbjct 8530757 GCTCATCTCCCGCGACGAGGGCCTGCAC 8530730 Score = 104 bits (114), Expect = 3e-17 Identities = 215/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| |||| || ||| || || || ||||| || Sbjct 28828673 GGGGCCAAGATCCCCAAGGGATGCCTGCTCGTCGGCCCGCCCGGAACCGGGAAGACACTG 28828614 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| |||| || || | || |||||| || ||| | || | | Sbjct 28828613 CTGGCGCGTGCCGTCGCCGGGGAGGCCGGAGTGCCATTCTTCTCCTGCGCCGCGTCCGAG 28828554 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| |||| || ||||| |||||| ||||| | || || || || | ||| Sbjct 28828553 TTCGTTGAGCTGTTCGTCGGTGTCGGTGCCTCCAGGGTCAGGGACCTGTTCGAGAAGGCC 28828494 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || || |||||||||||||| |||||||| || || | ||| || Sbjct 28828493 AAGGCCAAGGCCCCTTGCATCGTCTTCATTGATGAAATTGATGCCGTCGGGAGGCAGCGT 28828434 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | ||||| | | | | | |||||| ||||| || || || ||||| || || | | Sbjct 28828433 GGTGCTGGGCTCGGAGG--GGGAAATGATGAGAGGGAGCAGACCATTAACCAGCTCTTGA 28828376 Query 175574 CCGAGATGGATGGCTTTG 175591 | ||||||||||| |||| Sbjct 28828375 CTGAGATGGATGGATTTG 28828358 Score = 102 bits (112), Expect = 1e-16 Identities = 191/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| || || |||||| ||||||| |||||||| | | || Sbjct 28672047 TTTGTGGAGATGTTTGTCGGAGTTGGTGCCTCCCGGGTTCGTGATCTCTTCAAGAAGGCA 28672106 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 28672107 AAGGAGAATGCTCCTTGCATAGTATTTGTTGATGAAATTGATGCTGTTGGGAGGCAAAGA 28672166 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | ||||| | || || Sbjct 28672167 GGGACAGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTTTGAATCAGTTGCTGACT 28672226 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| || | |||||||| ||||| || | | Sbjct 28672227 GAGATGGATGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCTGCCACCAACAGGGCT 28672286 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 |||||||| ||| || | || | || || |||||||| Sbjct 28672287 GATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGA 28672327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569510514560