Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq2 612 2e-170 seq6 107 2e-18 seq5 84.2 3e-11 >seq2 Length=21549876 Score = 612 bits (678), Expect = 2e-170 Identities = 732/990 (74%), Gaps = 8/990 (1%) Strand=Plus/Plus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | | Sbjct 19773071 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 19773130 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||||||||| ||||| |||| Sbjct 19773131 TGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTC 19773190 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||||||||||||||| || || ||||||||||| | || || ||||| | Sbjct 19773191 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATA 19773250 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | ||||||||||| || | |||| ||| || || || | ||||| || || |||| Sbjct 19773251 TTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTT 19773310 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| || ||||||||||||| |||||||||||||||| | || | || Sbjct 19773311 GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTC 19773370 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | |||||| | | || | ||| | | | |||||| |||||||||| || || Sbjct 19773371 TACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 19773427 Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || |||||||||||||| ||||||||| || || || || | ||||| | Sbjct 19773428 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 19773487 Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 |||| ||| | |||| ||| | |||||||| ||||||||||| |||||| | || | Sbjct 19773488 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 19773547 Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506 | ||||||||||| |||| |||| | || ||||| ||||| || || ||||||||||| | Sbjct 19773548 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 19773607 Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566 | || |||||| | || ||||| ||||| ||||| || || || ||| ||||||||| | Sbjct 19773608 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 19773667 Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626 |||| ||||| || ||| | || | ||||| ||||| | || ||| || | | Sbjct 19773668 GTTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 19773727 Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686 |||||| || || ||||| ||||| |||||||| ||||| || |||||||| || || | Sbjct 19773728 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 19773787 Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746 | || | |||||||| ||||| || |||||||| || | | ||||||||| | | Sbjct 19773788 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGG 19773847 Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806 ||| |||||||| || | || ||| |||||| | ||| | || ||||| |||| Sbjct 19773848 TTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 19773907 Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCT 155865 | || ||||| ||||| |||||||| |||||||| || || | ||| || || || Sbjct 19773908 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCA-AGGTCGCGTTATTACT 19773966 Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925 || | ||| || || | ||||| ||| |||||||||||||||||||||||| ||||| Sbjct 19773967 ACTTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 19774026 Query 155926 GCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 ||||||||||||||||| ||||| |||||| Sbjct 19774027 GCTCACAACTTCCCTCTAGACCTAGCTGCT 19774056 >seq6 Length=36134596 Score = 107 bits (118), Expect = 2e-18 Identities = 130/176 (74%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 155080 GCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTAT 155139 ||||| |||| |||| |||||||||||| ||||| | | |||||||| | || Sbjct 31663508 GCTGCCTCTCCAATAGATATTGATGGTATTTGTGAATCT-----TAGTTCTTTACTTTAC 31663562 Query 155140 GGTAA-CAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTT 155198 || | | || ||||||||||| |||| |||| ||| | | || | | ||| | Sbjct 31663563 AAAAAACGATATTATCTCTGGTGCCATTGTTCCTACTTCTACGACGATCAGATTACACCT 31663622 Query 155199 CTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTT 155254 || || ||||||||||| ||| || ||||||||||||| |||||||||||||||| Sbjct 31663623 TTACCCGATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTT 31663678 >seq5 Length=35065507 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/160 (73%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835 |||||| | ||| | || ||||| ||||| || || || ||||| |||||||| ||| Sbjct 15426027 ACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTCAACCA-TCT 15425969 Query 155836 GTAGTAGAC-GCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGG 155894 ||||| || || | ||| || || ||| ||||| || || | ||||| || Sbjct 15425968 GTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCAAA 15425910 Query 155895 TCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAAC 155934 ||||| |||||||||||| ||||| ||||| |||||| || Sbjct 15425909 TCTTGCTATGGAAGTAATTCACGAACGTAATGCTCACCAC 15425870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584835112274720