Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq2 513 4e-141 seq5 84.2 6e-12 >seq2 Length=21549876 Score = 513 bits (568), Expect = 4e-141 Identities = 716/993 (72%), Gaps = 12/993 (1%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 19774056 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 19773997 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTA 40647 | | | ||| | | ||||||| |||||| ||| || ||| || || || |||| Sbjct 19773996 ATTAGCACGGTTGATGATATCAGCCAAAGTAGTAATAACGCGACC-TTGGCTATCAACTA 19773938 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || || || || || || |||||||||||| ||||| | | | Sbjct 19773937 CAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAG 19773878 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTG 40766 | | ||| || || | || || ||||| ||||||| |||||||| | || ||| Sbjct 19773877 TGAACCAAATCCCTACTACAGGCCAAGCAACCAAGAA-GAAGTGTAAAGATCGAGAGTTG 19773819 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTA 40826 || || ||||||||| || |||| || ||||| ||||| || || || || || ||| Sbjct 19773818 TTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTA 19773759 Query 40827 TAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTC 40886 |||||||| | || |||||||| | || || | || ||||| |||| ||||| Sbjct 19773758 TAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTT 19773699 Query 40887 TCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 |||| ||| | | |||| || ||||| || ||||||||| || | | ||| Sbjct 19773698 TCCCTAATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCG 19773642 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || || || || || || || | ||| || ||||| ||||| || ||||| || ||||| Sbjct 19773641 CCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCC 19773582 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 ||||| |||| ||| |||||||| || ||| ||||||||||||||||||||||||||| Sbjct 19773581 TGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAA 19773522 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 || ||||| | || |||| ||||| ||||| ||| |||| | ||||||| Sbjct 19773521 CTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAA 19773462 Query 41124 TATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCA 41183 ||||| ||| ||||| || | |||||| || | | | |||||||||| | ||| Sbjct 19773461 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCC 19773402 Query 41184 GCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTG 41243 || ||||| || | ||| ||||| | ||||| || | ||| || || || ||| Sbjct 19773401 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATTG 19773342 Query 41244 TATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCG 41303 |||| |||||| || | | | |||||||| |||||||| || || | |||||| || Sbjct 19773341 TATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCC 19773282 Query 41304 TTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAA 41363 ||| | |||| | || ||||| ||||||||||| ||||| | ||| || || ||| Sbjct 19773281 GCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAA 19773222 Query 41364 ACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA- 41422 || |||||||| || ||||| |||||||| || || || ||||| |||||||| || || Sbjct 19773221 ACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAAT 19773162 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 ||| | || || || | ||| | || ||||| | ||||| ||||| || | ||| || Sbjct 19773161 ACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAG 19773103 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| ||||||||||| | |||||| || || Sbjct 19773102 ACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 19773070 >seq5 Length=35065507 Score = 84.2 bits (92), Expect = 6e-12 Identities = 106/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 40550 GTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATC 40609 || |||||| ||||| ||||| |||||||||||| | ||| | | ||| | | ||| Sbjct 15425870 GTGGTGAGCATTACGTTCGTGAATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 15425929 Query 40610 AGCCCAAGTAGGAATGACTTTACCATTAGC-GTCTACTACTGACTGGTTAAAGTTAAAAC 40668 |||||||||| ||| || ||| || || || ||||| || ||||| || || || | Sbjct 15425930 AGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTACAGA-TGGTTGAAATTGAACC 15425987 Query 40669 CATTGAGGTTAAAAGCCATAGT 40690 |||| || || ||||||||||| Sbjct 15425988 CATTTAGATTGAAAGCCATAGT 15426009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143702379522408