Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq2 581 4e-161 seq5 89.7 6e-13 >seq2 Length=21549876 Score = 581 bits (644), Expect = 4e-161 Identities = 701/951 (74%), Gaps = 12/951 (1%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 19774056 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 19773997 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||| | ||| || ||| |||||| ||| || | |||| | ||||| Sbjct 19773996 ATTAGCACGGTTGATGATATCAGCCAAAGTAGTAATAACG---CGACCTTGGCTATCAAC 19773940 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| ||||| ||||| || ||||| |||||||| | ||| | || Sbjct 19773939 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 19773880 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||||||||| || | || ||||| | ||| | | ||||||||| | | || ||||| Sbjct 19773879 AGTGAACCAAATCCCTACTACAGGCCAAGCAACCAAGAAGAAGTGTAAAGATCGAGAGTT 19773820 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||| ||| ||||| |||||||| || || || || || |||||||| || ||||| || Sbjct 19773819 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 19773760 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||||||||| ||||| || || ||||||| | || || || | ||||| || Sbjct 19773759 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 19773700 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| || || | | ||| || || | ||||| ||||||||||| || || ||||| || Sbjct 19773699 TTCCCTAATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 19773640 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || ||||| |||||||||||||| |||||||| || Sbjct 19773639 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 19773580 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | ||| |||| ||||||||||| || || | |||||| | ||||||||| Sbjct 19773579 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 19773520 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | ||| || | |||||| ||||| || || | || ||||| || || Sbjct 19773519 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 19773460 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC--- 68011 ||| ||| ||||||||||||||||| |||||| || |||||||||| |||||| Sbjct 19773459 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 19773400 Query 68012 ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATT 68071 | | | ||| | || | | |||||| | || | || | |||| |||||||| Sbjct 19773399 ATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCACCATT 19773343 Query 68072 ATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGC 68131 || ||||||||||| | || ||| |||||||| || || || ||||| | ||||| || Sbjct 19773342 GTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGC 19773283 Query 68132 GTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGC 68191 ||| |||||| || |||||||| || || ||||| ||||| | | ||||| | Sbjct 19773282 CGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGA 19773223 Query 68192 AACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA 68251 |||||| || | |||||||| ||||| |||||||| || || ||||| || || || || Sbjct 19773222 AACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAA 19773163 Query 68252 GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || | ||| | | ||| ||| |||||||| ||||||||||| || Sbjct 19773162 TACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCC 19773112 >seq5 Length=35065507 Score = 89.7 bits (98), Expect = 6e-13 Identities = 124/171 (73%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 67379 GTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTC 67438 || |||||| ||||| ||||| || |||||||| |||| ||| | ||| | ||| || Sbjct 15425870 GTGGTGAGCATTACGTTCGTGAATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 15425929 Query 67439 TGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGGTTGAAGTTGAA 67495 ||||||||| ||| || | |||| | ||||| || ||| ||||||| ||||| Sbjct 15425930 AGCCCAAGTATTAATAACG---CGACCTTGGCTATCAACTACAGAT-GGTTGAAATTGAA 15425985 Query 67496 ACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGAT 67546 || || || ||||| |||||||| | ||| | ||||||||||| || Sbjct 15425986 CCCATTTAGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCAAAT 15426036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566947114957920