Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq2 488 6e-133 seq8 322 5e-83 seq4 196 6e-45 seq9 96.9 4e-15 >seq2 Length=21549876 Score = 488 bits (540), Expect = 6e-133 Identities = 697/976 (71%), Gaps = 4/976 (0%) Strand=Plus/Plus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| ||| || || || | ||| | || ||||| ||||| || |||||||| Sbjct 19773079 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 19773137 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 19773138 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 19773197 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 72422 ||| || || || | || || ||| | |||||||| | || || ||||| || ||||| Sbjct 19773198 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTC 19773257 Query 72423 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 72482 |||||| | |||| |||| || || ||||| ||||| || || || |||||||| Sbjct 19773258 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 19773317 Query 72483 AGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 72542 || || | || |||||||| || || || |||||||| || || || || | ||||| Sbjct 19773318 TGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTT 19773377 Query 72543 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 72602 | | |||| | || || |||||| | |||||||||| | | | || || || Sbjct 19773378 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTAT 19773437 Query 72603 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 72662 | | |||||||| ||| ||||| ||||| ||||| | || || ||| || ||| | Sbjct 19773438 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 19773497 Query 72663 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 72722 | || || | ||||| || ||||||||||||||||| |||| || || ||||| Sbjct 19773498 GATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTAC 19773557 Query 72723 GTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATAT 72782 |||||||| ||| | || ||||| ||||| || ||||| || ||||| || || || || Sbjct 19773558 TTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACAT 19773617 Query 72783 GGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGT 72842 | ||||||||| ||| | ||||| ||| || |||||||| ||||| ||||| | || Sbjct 19773618 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 19773677 Query 72843 TACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTT 72902 || || | | || || || || || || ||||| | || | || || | || Sbjct 19773678 AACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATT 19773737 Query 72903 CGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAAT 72962 || ||||| ||||| || ||||| ||||| || |||||||| || || || ||||||| Sbjct 19773738 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAAT 19773797 Query 72963 CTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCC 73022 |||||| ||||| || ||||||||||| || |||||||||||| | | || | || Sbjct 19773798 CTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGGTTGCTTGGCC 19773857 Query 73023 TGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAACGG 73082 |||||| | | ||||| || | | ||||| |||| ||||| ||||| || ||||| Sbjct 19773858 TGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGG 19773917 Query 73083 ATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAG 73141 |||||| ||||||||||| || || ||| || || || || | | || | || | Sbjct 19773918 ATTCAATTTCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTACTACTTTGGCTG 19773976 Query 73142 ATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACT 73201 || | | ||| | || || ||||| |||||||| ||||| ||| | ||||| ||||||| Sbjct 19773977 ATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACT 19774036 Query 73202 TCCCACTAGACCTAGC 73217 |||| ||||||||||| Sbjct 19774037 TCCCTCTAGACCTAGC 19774052 >seq8 Length=28014461 Score = 322 bits (356), Expect = 5e-83 Identities = 692/1038 (67%), Gaps = 21/1038 (2%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | || || |||||| || || ||||| || || | ||||||||||| Sbjct 17889485 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 17889426 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || ||||| ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 17889425 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 17889366 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || || ||||| || ||||| | || || ||| | || || ||||| ||| Sbjct 17889365 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 17889306 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || |||||||| || || |||| || | | | || | | ||| | || ||||| Sbjct 17889305 ACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 17889246 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 || || |||||||| ||| || || |||| |||||||||||| || |||| ||||| Sbjct 17889245 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 17889186 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || | ||||| | |||| ||| |||||||||||| | | || ||||| |||| | Sbjct 17889185 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 17889126 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 |||| | || ||||| || ||| | | || || | ||||| || || Sbjct 17889125 TCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTT 17889066 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | | || || || ||||| | || || |||||||||| || || || || Sbjct 17889065 TCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGC 17889006 Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903 || ||||| || ||||| | || | ||| | || || || || ||| || | || Sbjct 17889005 GTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 17888946 Query 73904 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 73963 ||||||||||||||||| || || || || | || | || | ||||| || || ||| Sbjct 17888945 CCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 17888886 Query 73964 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 74023 || ||||| || | ||||| | | ||| | || ||| ||| Sbjct 17888885 GGGGCAACCGTGGAAAACACTCTATTTGAGG------------ACGGTGATGGT------ 17888844 Query 74024 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATT 74083 | | || ||| | || || | || || || | ||||| |||||| ||| | Sbjct 17888843 ---GCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCCATGGTC 17888787 Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143 || ||||| | || ||||| || || |||||| | || ||||| || ||| | | ||| Sbjct 17888786 ACCGCTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTA 17888727 Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203 || ||| ||||| | || ||||| |||| ||| | |||| |||| || | || Sbjct 17888726 CATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTC 17888667 Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 74263 || || || || ||||| | || || ||||| || || || || || | ||||| ||| Sbjct 17888666 GGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 17888607 Query 74264 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 74323 || || || ||||| || |||||||| || || |||||| | || || ||||| | || Sbjct 17888606 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCG 17888547 Query 74324 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 74383 |||||| || || ||||| || ||||| || || | ||||| || || || | ||| Sbjct 17888546 TGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCA 17888487 Query 74384 CGAGGCAACGCACTATAA 74401 || || ||||| || ||| Sbjct 17888486 CGTGGAAACGCTCTTTAA 17888469 >seq4 Length=20076173 Score = 196 bits (216), Expect = 6e-45 Identities = 383/566 (68%), Gaps = 0/566 (0%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | || || |||||| || || ||||| || || | ||||||||||| Sbjct 17460153 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 17460212 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || ||||| ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 17460213 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 17460272 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || || ||||| || ||||| | || || ||| | || || ||||| ||| Sbjct 17460273 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 17460332 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || |||||||| || || |||| || | | | || | | ||| | || ||||| Sbjct 17460333 ACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 17460392 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 || || |||||||| ||| || || |||| |||||||||||| || |||| ||||| Sbjct 17460393 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 17460452 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || | ||||| | |||| ||| |||||||||||| | | || ||||| |||| | Sbjct 17460453 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 17460512 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 |||| | || ||||| || ||| | | || || | ||||| || || Sbjct 17460513 TCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTT 17460572 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | | || || || ||||| | || || |||||||||| || || || || Sbjct 17460573 TCCGTATTCCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGC 17460632 Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903 || ||||| || ||||| | || | ||| | || || || || ||| || | || Sbjct 17460633 GTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 17460692 Query 73904 CCATTTCATATGATGGGTGTAGCAGG 73929 ||||||||||||||||| || || || Sbjct 17460693 CCATTTCATATGATGGGAGTTGCCGG 17460718 >seq9 Length=29411429 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 72942 TGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACA 73001 ||| || || || ||||||||||||| ||||| || |||||||||||||| ||||| Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 73002 CTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTAC 73061 ||||||| | |||| | |||||||| | | ||||| || | | ||||| |||| Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 73062 AATGGCATTCAACCTTAA 73079 ||||| ||||| ||||| Sbjct 9641772 TATGGCTTTCAATCTTAA 9641755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572873514068960