Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq8 111 1e-19 seq7 82.4 6e-11 >seq8 Length=28014461 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| || || |||||||||||||||||| | || ||| | Sbjct 24290771 AATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTC 24290830 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | |||||| |||||| ||||| || ||| | ||| |||||| Sbjct 24290831 AGACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 24290890 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || |||| || | || || || ||||| ||||||| | | | | || |||||||| Sbjct 24290891 GCAGCGACTGATCTTGGCTGGCAAGCAGCTCGAGGATGGCCGCGCCTTAGCAGATTACAA 24290950 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||| || || || || || |||||| ||||| Sbjct 24290951 CATCCAGAAGGAGTCCACCTTGCACCTGGTG 24290981 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 |||||| || || ||||| ||| | || ||||| || |||||| | || ||| || Sbjct 22387361 AATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCCTGGAGGTTGAGAGCTC 22387420 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | | || || |||||| || || || ||| | ||| ||| | Sbjct 22387421 A-GACACCATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACC 22387479 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || ||||| || | || ||||| ||||||||||||| | | || | || || |||| Sbjct 22387480 AGCAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACA 22387539 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||| || || ||||| | ||| ||||| Sbjct 22387540 ACATTCAGAAGGAGTCTACCCTACACTTGGTG 22387571 >seq7 Length=28646061 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | || ||||| ||||||||| | || ||| | | Sbjct 26601192 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTCC 26601251 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 26601252 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 26601311 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | | || | |||||||||||| Sbjct 26601312 CAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAAC 26601371 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || | ||| ||||| Sbjct 26601372 ATCCAGAAGGAGTCCACACTCCACCTGGTG 26601401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841539621916