Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq8 111 1e-19 >seq8 Length=28014461 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| |||||||| || || || ||||||||||||||| | || ||| | Sbjct 24290771 AATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTC 24290830 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | |||||| ||||||| || || || ||| | ||| |||||| Sbjct 24290831 AGACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGGGCATTCCCCCGGATCA 24290890 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| |||| || | || || || ||||| ||||| | | | | || || ||||| Sbjct 24290891 GCAGCGACTGATCTTGGCTGGCAAGCAGCTCGAGGATGGCCGCGCCTTAGCAGATTACAA 24290950 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || |||||| ||||| Sbjct 24290951 CATCCAGAAGGAGTCCACCTTGCACCTGGTG 24290981 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| ||||| ||||| ||| | || ||||| || |||||| | || ||| ||| Sbjct 22387361 AATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCCTGGAGGTTGAGAGCTC 22387420 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | || || ||||| ||||| || ||| | ||| ||| | Sbjct 22387421 A-GACACCATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACC 22387479 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| || | || ||||| ||||||||||| | | || | || ||||||| Sbjct 22387480 AGCAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACA 22387539 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||| ||||||||||| | ||| ||||| Sbjct 22387540 ACATTCAGAAGGAGTCTACCCTACACTTGGTG 22387571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876741664268