Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq8 120 2e-22 seq7 104 2e-17 seq11 102 6e-17 seq9 100 2e-16 >seq8 Length=28014461 Score = 120 bits (132), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||| || | ||||| || || || ||||| ||||| || | || ||| Sbjct 24290987 ACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGCGCGGCC 24290928 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || |||||||| | |||| || ||||||||||| ||||| ||||| || Sbjct 24290927 ATCCTCGAGCTGCTTGCCAGCCAAGATCAGTCGCTGCTGATCCGGGGGAATGCCCTCCTT 24290868 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| |||| ||| || | || | ||||| || || || || || || | Sbjct 24290867 GTCCTG-AATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAA 24290809 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | |||||||| || || || || ||||| || |||||| Sbjct 24290808 TGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 24290771 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | || || || | || || ||||| ||||| ||||||| ||||| || Sbjct 24290130 TCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCTTTCCGAATGTTGTAATCTGC 24290071 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | |||||| || || ||||| ||||| ||| | || | | ||||| || || || Sbjct 24290070 GAGGGTGCGTCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGG 24290011 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||||||| ||||| || ||| || | |||||| | | |||||||| || | Sbjct 24290010 AATACCCTCCTTGTCCTG-AATCTTGGCCTTGACATTGTGAGTTGTGTCAGAGGACTCAA 24289952 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| || |||||||| | || || ||||| |||||||| Sbjct 24289951 CCTCTAGGGTTATGGTATTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 24289903 >seq7 Length=28646061 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | || || ||||| || || || ||||| ||||| |||| ||||||| | Sbjct 24916562 CGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGACCA 24916503 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | || | | ||||| || || ||||||||||| ||| Sbjct 24916502 TCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTG 24916443 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | |||||||| || || || || || || Sbjct 24916442 TCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGACGACTCAACCTCCAGGGTGATG 24916383 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| || || || |||||||| Sbjct 24916382 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 24916348 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| || | ||||| || || || |||||||| || |||| |||||| Sbjct 24916334 CGGAGGACCAAGTGCAAGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTGCGGCCG 24916275 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | || | | ||||| || || ||||||||||| ||| Sbjct 24916274 TCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTG 24916215 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | |||||||| || || || | || || Sbjct 24916214 TCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGAGGACTCAACCTCCAAGGTGATC 24916155 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || ||||| |||||||| Sbjct 24916154 GTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 24916120 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| || || || |||||||||||||| | || || ||| || || || |||||| Sbjct 24915860 GTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCA 24915801 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TT 29708 || | || | | |||||| ||||| || || ||||| ||||| || ||| || | || Sbjct 24915800 GCGAAGATAAGGCGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG-AATCTTAGCCTT 24915742 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || || || || || || | || || || |||||||| | ||| Sbjct 24915741 CACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 24915682 Query 29769 TTTAACAAATATCTGCAT 29786 ||||| ||||||||||| Sbjct 24915681 CTTAACGAATATCTGCAT 24915664 >seq11 Length=26703665 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || || || || |||||||| || || |||| |||||| Sbjct 4117597 ACGGAGGACAAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGTCC 4117656 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || |||||||| | || | | ||||| ||||| ||||||||||| || Sbjct 4117657 TTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGAATACCCTCCTT 4117716 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || || ||| | || | ||||| || || || ||||| || || Sbjct 4117717 ATCCTGGATCTTCGCCTTCACATTGTCGATTGTGTCGGATGACTCCACCTCAAGGGTGAT 4117776 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || | |||||| ||||| |||||||| Sbjct 4117777 GGACTTGCCGGTCAGGGTTTTCACAAAGATCTGCAT 4117812 >seq9 Length=29411429 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| |||||||| ||||| || ||||| |||||||| ||||| || Sbjct 26092054 TCCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAGC 26091995 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || ||||| || || || | |||| |||||||| || || || Sbjct 26091994 TAATGTACGTCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGGG 26091935 Query 29679 AATACCCTCTTTGTCTTG 29696 ||||||||||||||| || Sbjct 26091934 AATACCCTCTTTGTCCTG 26091917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219143661692