Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq8 536 1e-147 seq2 513 2e-140 seq4 316 2e-81 seq9 91.5 2e-13 seq6 91.5 2e-13 >seq8 Length=28014461 Score = 536 bits (594), Expect = 1e-147 Identities = 725/1005 (72%), Gaps = 4/1005 (0%) Strand=Plus/Minus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 |||| |||||| | |||| || ||||| ||||| || |||||||| || | ||| Sbjct 17889475 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 17889416 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||||||| | || | || |||||| |||| |||||| ||||||| || || Sbjct 17889415 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 17889356 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCT 179127 |||| |||||||| | || ||||||||| | |||||| || ||||||| | ||||| Sbjct 17889355 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCAGCA 17889297 Query 179128 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179187 || || || ||||| || | | | || ||| | | ||||| ||||| || || | Sbjct 17889296 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCA 17889237 Query 179188 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCAC 179247 || ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 17889236 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCAT 17889177 Query 179248 GGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGG 179306 || || || || ||||| || |||||| | ||||| |||||||| || || ||| || Sbjct 17889176 GGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAA 17889117 Query 179307 TATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATT 179366 | | || ||||| ||||| ||| | || |||| || || || || || ||| ||||| Sbjct 17889116 T-TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATT 17889058 Query 179367 TCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGC 179426 || || || ||||| || |||||| |||||||||||||||| ||||| || || || Sbjct 17889057 CCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGC 17888998 Query 179427 GATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCA 179486 ||| ||| ||||| | || ||||| ||||| || || || ||||| | ||||| ||||| Sbjct 17888997 GATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCA 17888938 Query 179487 CATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAAC 179546 |||||||||||||| || | | || | |||||||| | ||||||||||| | ||| Sbjct 17888937 TATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAAC 17888878 Query 179547 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTC 179606 || || || || | | ||| || || || ||||| || || || || || | Sbjct 17888877 CGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCC 17888818 Query 179607 TACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTT 179666 || |||| || || || ||||| ||||| || || || || |||||||| || ||||| Sbjct 17888817 AACTCAAGCTGAAGAAACTTATTCCATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTT 17888758 Query 179667 CGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCAT 179726 || ||| | ||| |||||| |||||||| || ||||||| ||| ||||| || |||| Sbjct 17888757 TGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCAC 17888698 Query 179727 GGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGA 179786 ||| | ||| | | |||||||| | | || || ||||| || || ||||| ||||| Sbjct 17888697 CGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTGAACCTACGTGCCTATGA 17888638 Query 179787 TTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAA 179846 || || || || ||| | ||||| ||||||||||| || ||||| ||||| || || Sbjct 17888637 CTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAA 17888578 Query 179847 GAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGA 179906 || |||||| | || || || | ||||| ||| ||||| || ||||| || ||||| Sbjct 17888577 AAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGA 17888518 Query 179907 AAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAACGCACT 179951 ||| | || ||||| || || || ||||| |||| ||||| || Sbjct 17888517 AAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 17888473 >seq2 Length=21549876 Score = 513 bits (568), Expect = 2e-140 Identities = 711/989 (72%), Gaps = 5/989 (1%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 19773070 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 19773129 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | |||||| |||| || || |||||||| ||||||| || Sbjct 19773130 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCC 19773188 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || ||||| || || ||||||| | | || || ||||| Sbjct 19773189 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 19773248 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || ||||||||||| || | || |||| || || || | ||||| || || || Sbjct 19773249 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 19773308 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| ||||| ||||||||||| | || || |||||||||| | || | || Sbjct 19773309 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 19773368 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | |||||| | | || | | |||||||| |||||||||||||| | ||| Sbjct 19773369 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 19773428 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 ||| |||||||| || ||||| ||||||||| || || ||||||||||| || | || Sbjct 19773429 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 19773488 Query 177977 AGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 || ||||| | | || ||| | |||||||| ||||| |||| ||||||| | || | Sbjct 19773489 TGT-TTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 19773547 Query 178036 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACC 178095 | ||||||||||| |||| ||| |||||||||| ||||| || || ||||||||||| | Sbjct 19773548 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 19773607 Query 178096 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 178155 | || |||||| | ||||| ||||| |||||||| || || || ||| ||||||||||| Sbjct 19773608 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 19773667 Query 178156 GAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATG 178215 | | || || ||| | | | || || || |||| || || || | | Sbjct 19773668 GTTCCTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 19773727 Query 178216 GTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCG 178275 |||||| || || ||||| ||||| || ||||| || || || || |||||||| || | Sbjct 19773728 GTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTG 19773787 Query 178276 GTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 178335 | || || |||||||||||||| || |||||||| || || | ||||||||| | | Sbjct 19773788 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGG 19773847 Query 178336 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTA 178395 || ||||||||||| || || |||||||| || | ||| | || ||||| || | Sbjct 19773848 TTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 19773907 Query 178396 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178455 | || || |||||||| |||||||| || | | || | ||||| || || | | | Sbjct 19773908 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTA 19773967 Query 178456 CATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATA 178515 | | ||| || | |||||||||| ||| || |||||||| ||||||||| | ||| Sbjct 19773968 CTTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT- 19774026 Query 178516 GCACATAACTTCCCGCTTGATCTTGCAGC 178544 || || |||||||| || || || || || Sbjct 19774027 GCTCACAACTTCCCTCTAGACCTAGCTGC 19774055 >seq4 Length=20076173 Score = 316 bits (350), Expect = 2e-81 Identities = 408/558 (73%), Gaps = 4/558 (1%) Strand=Plus/Plus Query 178949 TGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179008 |||| |||||| | |||| || ||||| ||||| || |||||||| || | ||| Sbjct 17460163 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 17460222 Query 179009 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179068 |||| ||||||| | || | || |||||| |||| |||||| ||||||| || || Sbjct 17460223 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 17460282 Query 179069 GGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCT 179127 |||| |||||||| | || ||||||||| | |||||| || ||||||| | ||||| Sbjct 17460283 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCAGCA 17460341 Query 179128 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179187 || || || ||||| || | | | || ||| | | ||||| ||||| || || | Sbjct 17460342 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCA 17460401 Query 179188 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCAC 179247 || ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 17460402 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCAT 17460461 Query 179248 GGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGG 179306 || || || || ||||| || |||||| | ||||| |||||||| || || ||| || Sbjct 17460462 GGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAA 17460521 Query 179307 TATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATT 179366 | | || ||||| ||||| ||| | || |||| || || || || || ||| ||||| Sbjct 17460522 T-TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCGTATT 17460580 Query 179367 TCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGC 179426 || || || ||||| || |||||| |||||||||||||||| ||||| || || || Sbjct 17460581 CCTGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGC 17460640 Query 179427 GATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCA 179486 ||| ||| ||||| | || ||||| ||||| || || || ||||| | ||||| ||||| Sbjct 17460641 GATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCA 17460700 Query 179487 CATGATGGGAGTTGCAGG 179504 |||||||||||||| || Sbjct 17460701 TATGATGGGAGTTGCCGG 17460718 >seq9 Length=29411429 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 178265 TGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCA 178324 |||||| || || || || |||||||||||||| || |||||||| ||||| | || Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 178325 CTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCAC 178384 ||||||| | || || ||||||||||| || || |||||||| || | ||| | || Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 178385 CATGGCATTTAACCTCAA 178402 ||||| || || || || Sbjct 9641772 TATGGCTTTCAATCTTAA 9641755 >seq6 Length=36134596 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||||||||| || || || || | || ||||||||||| || |||||||| Sbjct 34705558 TACATCCTTGATGCCGCCGAGACCGCTGGAGTGGAGCTTCCCTACTCATGCCGTGCTGGA 34705617 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 ||||| ||||||||||||||||| | | | || | || || ||||| || || Sbjct 34705618 GCATGCTCTACCTGTGCTGGTAAGATCGAGGCTGGCTCCGTCGACCAGTCGGATGGATCA 34705677 Query 138658 TTCCTTGATGATG 138670 ||||||||||||| Sbjct 34705678 TTCCTTGATGATG 34705690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605667109149920