Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq9 89.7 3e-13 seq5 86.0 4e-12 seq12 84.2 1e-11 seq8 82.4 5e-11 seq7 82.4 5e-11 >seq9 Length=29411429 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 7709382 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTC 7709323 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || || | |||||||| || |||| | || || ||||| Sbjct 7709322 CAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTG 7709263 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| | | ||| | |||||| || ||||| || | ||||||||| | Sbjct 7709262 GATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCT 7709204 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 7709203 TCCCCGTCAGGGTCTTCACGAAGATCTGCAT 7709173 >seq5 Length=35065507 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || |||||| |||||| || ||||||||||| | || || || ||| || | || Sbjct 30648658 TGAAGAGTGGACTCTTTCTGAATGTTGTAATCAGCCAGGGTCCGACTGTCCTCAAGCTGC 30648717 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||| || | ||||||||| || | || | || || ||||| || ||| Sbjct 30648718 TTGCCGGCAAAGATGAGACGCTGCTGGTCAGGAGGGATCCCCTCCTTGTCCTGGATCTTC 30648777 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| |||| ||| | ||||| || || || || | ||||| || || ||||| Sbjct 30648778 GCCTTC-ACATTGTCGATCGTGTCCGACGACTCGACCTCGAGAGTGATGGTCTTTCCTGT 30648836 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || || || |||||||||||||| Sbjct 30648837 CAAGGTCTTCACAAAGATCTGCAT 30648860 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | ||||| || || ||| ||| || || |||||||| |||| Sbjct 3011892 ACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 3011951 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| |||||| | || |||| || || || || || |||| ||||||||| ||| | || Sbjct 3011952 GAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGG 3012011 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || ||||| || || |||| ||| ||| ||||||| || | Sbjct 3012012 AATCCCCTCCTTGTCCTGGATCTTGGCCTTCA-CATTATCAATGGTGTCGGAGCTCTCAA 3012070 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || || || || || |||||||||||| Sbjct 3012071 CCTCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCATA 3012120 >seq12 Length=20407407 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| ||| || || |||||||| |||| |||||||| | || ||| Sbjct 12157683 ACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGCCAGTGTGCGCCCATCTTCC 12157624 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 | || || ||||| || ||||||||||| |||||| | || | ||||| ||||| Sbjct 12157623 AGCTGCTTGCCGGCGAATATCAAACGCTGTTGATCTGGAGGGATCCCTTCCTTGTC 12157568 >seq8 Length=28014461 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| || | ||| || | | || |||| || Sbjct 22387336 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTCCTGCCATCCTCCAGCTGC 22387277 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||||||||| | ||||||||||||| | || | || || ||||| || ||| Sbjct 22387276 TTGCCGGCAAAAATAAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTC 22387217 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| || | ||| | ||||| ||| || || |||| ||| || || || || || Sbjct 22387216 GCCTTC-ACGTTGTCGATCGTGTCTGATGACTCAACCTCAAGCGTAATGGTCTTGCCAGT 22387158 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 22387157 AAGGGTCTTCACGAAGATCTGCAT 22387134 >seq7 Length=28646061 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| || ||||| |||| |||| || Sbjct 26600938 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCCAGCTGC 26600879 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| || | ||||||||| ||| | || | || || ||||| || || Sbjct 26600878 TTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTG 26600819 Query 33667 TGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | ||| |||| |||||| || || || |||| ||||| || || || || Sbjct 26600818 GCCTTGA-CATTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 26600760 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || || || || ||||||||||| Sbjct 26600759 CAAGGTCTTGACGAAGATCTGCAT 26600736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703951927040