Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq2 517 3e-142 seq9 116 1e-21 seq5 102 2e-17 >seq2 Length=21549876 Score = 517 bits (572), Expect = 3e-142 Identities = 708/982 (72%), Gaps = 8/982 (1%) Strand=Plus/Plus Query 28639 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 28698 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 19773076 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 19773135 Query 28699 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGT 28757 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 19773136 CC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGT 19773194 Query 28758 TGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCAT 28817 || |||||||| || || || ||||| |||| | | || || |||||||| || || Sbjct 19773195 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTAT 19773254 Query 28818 ATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 28875 || || ||| | | || | | || || |||||| | ||||| |||||||||||| Sbjct 19773255 CTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 19773312 Query 28876 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 28935 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 19773313 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 19773372 Query 28936 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 28995 |||||| | |||| || | ||| ||||| || ||||||||||| || | || || Sbjct 19773373 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTG 19773432 Query 28996 GGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTT 29055 || ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| ||| Sbjct 19773433 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 19773492 Query 29056 TTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCA 29115 ||| | | ||||| | |||||||| ||| || | |||||||| || || || Sbjct 19773493 TTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 19773552 Query 29116 GGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTC 29175 || || ||||||| ||| | || ||||| || || |||||||| || ||||| || || Sbjct 19773553 GGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTT 19773612 Query 29176 CACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCG 29235 |||||| | || || ||||| || ||||| || || ||||| ||||| ||||| ||||| Sbjct 19773613 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCC 19773672 Query 29236 CTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTA 29294 | || || || | | ||| | | || || |||||| || ||| || | ||||| Sbjct 19773673 TTGGTAACCTC-TAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTA 19773731 Query 29295 CAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACG 29354 || ||||| ||||| |||||||||||||| || || |||||||| ||||| ||||| || Sbjct 19773732 CAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCG 19773791 Query 29355 TTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGC 29414 || ||||||||||||||| ||| || || || ||| ||||||||||| | | ||| Sbjct 19773792 ATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGGTTGC 19773851 Query 29415 CTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCT 29474 ||||| || ||||||||||||||| |||| || || || ||| ||||| || ||||| Sbjct 19773852 TTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCT 19773911 Query 29475 GAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTG 29534 ||||| || || || ||||| || | | || | | | ||||| || |||| ||||| Sbjct 19773912 AAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTACTTT 19773971 Query 29535 GGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCA 29594 ||||||| | |||| || ||||| || || | ||||||||||| || ||||||||||| Sbjct 19773972 GGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCA 19774031 Query 29595 TAACTTCCCACTTGATCTGGCT 29616 |||||||| || || || ||| Sbjct 19774032 CAACTTCCCTCTAGACCTAGCT 19774053 >seq9 Length=29411429 Score = 116 bits (128), Expect = 1e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29341 GGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACAC 29400 ||||| ||||| || || ||||||||||||||| ||| || || |||||| ||||| Sbjct 9641891 GGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACAC 9641832 Query 29401 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 29460 |||||| | ||||| ||||| || ||||||||||||||| |||| || || || ||| Sbjct 9641831 TTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACT 9641772 Query 29461 ATGGCGTTTAATCTGAA 29477 ||||| || ||||| || Sbjct 9641771 ATGGCTTTCAATCTTAA 9641755 >seq5 Length=35065507 Score = 102 bits (112), Expect = 2e-17 Identities = 126/171 (74%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 29424 GGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTT 29483 ||||| |||||||||| |||| || || || || ||||| || ||||| || || || Sbjct 15426043 GGTAGAGATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTT 15425984 Query 29484 TAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGT 29543 || || ||||| || | | || | | | ||||| || |||||||||||||||||| | Sbjct 15425983 CAATTTCAACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATAT 15425925 Query 29544 TCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCA 29594 |||| || || || || | | |||||||| || || ||||||||||| Sbjct 15425924 CATCAACCGTGCAAATCTTGCTATGGAAGTAATTCACGAACGTAATGCTCA 15425874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146665579100152