Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20nivara_20[genbank_20GCA_5F000576065.1_202014-02-25] 12 sequences; 337,950,324 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq2 574 1e-159 seq5 95.1 3e-15 seq9 82.4 2e-11 >seq2 Length=21549876 Score = 574 bits (636), Expect = 1e-159 Identities = 721/978 (74%), Gaps = 16/978 (2%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || ||||||||||| ||||| ||||| || ||||||| | Sbjct 19773077 ACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCC 19773136 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | || ||| | ||| || ||||| |||||||| ||||| ||||| || Sbjct 19773137 C-TACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGT 19773194 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || ||||||||| | || | | ||||| |||||||| || || Sbjct 19773195 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTAT 19773254 Query 18909 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966 || || ||| | |||| | | || || |||||| | ||||| |||||||||||| Sbjct 19773255 CTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 19773312 Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19026 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 19773313 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTA 19773372 Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | |||| || | ||| ||||| || ||||||||||| || | || || Sbjct 19773373 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTG 19773432 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 || ||||| ||||||||| |||||| || |||||||||||||| || || |||| || Sbjct 19773433 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 19773492 Query 19147 TTCCTTGTCTATCCATTTGGTCAAG---GTTCCTTTAGCGACGCTATGCCTTTGGGTATT 19203 ||| | | || || ||||||||| ||| || | || | ||||||||| || || Sbjct 19773493 TTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT---GATGGTATGCCTTTAGGAATA 19773549 Query 19204 AGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCG 19263 |||||| ||||||| ||| ||||||||||||| || ||||||||||| ||||| || Sbjct 19773550 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCA 19773609 Query 19264 TTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGT 19323 || |||||| | ||||| |||||||| |||||||| || ||||| ||||| ||||| ||| Sbjct 19773610 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 19773669 Query 19324 TCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGG 19382 || |||| || || | ||| | | ||||| |||||| | | |||| || | || Sbjct 19773670 TC-CTTGGTAACCTCTAGTTTGATTAGGGAAACCACTGAAAACGAATCTGCTAATGAGGG 19773728 Query 19383 CTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGG 19442 |||| ||||| ||||| |||||||||||||| ||||| || |||||||| |||||||| Sbjct 19773729 TTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 19773788 Query 19443 TCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGC 19502 || | || ||||| || || || ||||| || ||| |||| ||||| |||| Sbjct 19773789 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGATCTTTACACTTCTTCTTGGT 19773848 Query 19503 TGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAA 19562 |||||||||||| || || |||||||| | || | || | || || ||||| ||||| Sbjct 19773849 TGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 19773908 Query 19563 CTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATAC 19622 | || || || || || ||||| || | |||| | | | ||||| || ||| ||| Sbjct 19773909 TCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTACTAC 19773968 Query 19623 TTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGC 19682 || |||||| || |||| |||||||| || || | || |||||||||||||||||||| Sbjct 19773969 TTTGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGC 19774028 Query 19683 TCATAACTTCCCACTTGA 19700 ||| |||||||| || || Sbjct 19774029 TCACAACTTCCCTCTAGA 19774046 >seq5 Length=35065507 Score = 95.1 bits (104), Expect = 3e-15 Identities = 120/164 (73%), Gaps = 1/164 (1%) Strand=Plus/Minus Query 19522 ATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTT 19581 |||||||| | || | || | || || ||||| ||||| | ||||| || || || Sbjct 15426036 ATTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAATGGGTTCAATTTC 15425977 Query 19582 AACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAAT 19641 ||||| || | |||| | | | ||||| || ||| ||||||||||||| || |||| Sbjct 15425976 AACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 15425918 Query 19642 CGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCA 19685 ||||| || || | | || ||||| ||||||||||||||||| Sbjct 15425917 CGTGCAAATCTTGCTATGGAAGTAATTCACGAACGTAATGCTCA 15425874 >seq9 Length=29411429 Score = 82.4 bits (90), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 19431 TGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACA 19490 ||| |||||||| || | || ||||| || || || ||||| |||||| |||| Sbjct 9641892 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACA 9641833 Query 19491 TTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCAC 19550 ||||| ||||||||||||||||| || || |||||||| | || | || | || || Sbjct 9641832 CTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 9641773 Query 19551 CATGGCATTCAA-CTTGAAT 19569 ||||| ||||| ||| ||| Sbjct 9641772 TATGGCTTTCAATCTTAAAT 9641753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141148779886296